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Single-cell transcriptome sequencing of rumen ciliates provides insight into their molecular adaptations to the anaerobic and carbohydrate-rich rumen microenvironment 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 143, 期号: 1, 页码: 12
Authors:  Feng, Jin-Mei;  Jiang, Chuan-Qi;  Sun, Zong-Yi;  Hua, Cong-Jie;  Wen, Jian-Fan;  Miao, Wei;  Xiong, Jie
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Rumen ciliate  Adaptive evolution  Phylogenomics  Rumen microenvironment  Horizontal gene transfer  
Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 132, 期号: 1, 页码: 25-35
Authors:  Jiang, Chuan-Qi;  Wang, Guang-Ying;  Xiong, Jie;  Yang, Wen-Tao;  Sun, Zong-Yi;  Feng, Jin-Mei;  Warren, Alan;  Miao, Wei
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Parallel adaptive radiation  Peritrichia  Phylogenomics  Morphology  Spasmin  
Improving phylogenetic inference of core Chlorophyta using chloroplast sequences with strong phylogenetic signals and heterogeneous models 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 127, 页码: 248-255
Authors:  Fang, Ling;  Leliaert, Frederik;  Novis, Phil;  Zhang, Zhenhua;  Zhu, Huan;  Liu, Guoxiang;  Penny, David;  Zhong, Bojian
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Green algae  Phylogenomics  GC-heterogeneous sites  Heterogeneous models  Phylogenetic signals  
Reclassification of Lamprotula rochechouartii as Margaritifera rochechouartii comb. nov (Bivalvia: Margaritiferidae) revealed by time-calibrated multi-locus phylogenetic analyses and mitochondrial phylogenomics of Unionoida 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 120, 期号: 1, 页码: 297-306
Authors:  Huang, Xiao-Chen;  Wu, Rui-Wen;  An, Chang-Ting;  Xie, Guang-Long;  Su, Jin-Hui;  Ouyang, Shan;  Zhou, Chun-Hua;  Wu, Xiao-Ping
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Freshwater pearl mussel  Unionidae  BEAST  BioGeoBEARS  Biogeography  DUI  
Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 卷号: 106, 期号: 1, 页码: 1-5
Authors:  Gentekaki, Eleni;  Kolisko, Martin;  Gong, Yingchun;  Lynn, Denis
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Ciliophora  Peritrichia  Sessilida  Mobilida  Phylogenomics  
Phylogenetic framework of the systematically confused Anteholosticha-Holosticha complex (Ciliophora, Hypotrichia) based on multigene analysis 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 91, 页码: 238-247
Authors:  Zhao, Xiaolu;  Gao, Shan;  Fan, Yangbo;  Strueder-Kypke, Michaela;  Huang, Jie
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Anteholosticha  Arcuseries  Holosticha  Molecular Phylogeny  Multigene Analysis  
Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 90, 页码: 104-111
Authors:  Feng, Jin-Mei;  Jiang, Chuan-Qi;  Warren, Alan;  Tian, Miao;  Cheng, Jun;  Liu, Guang-Long;  Xiong, Jie;  Miao, Wei;  Miao, W (reprint author), Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China.
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Oligohymenophorea  Scuticociliatia  Hymenostomatia  Phylogenomics Analysis  
Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 85, 期号: *, 页码: 97-116
Authors:  Yang, Lei;  Sado, Tetsuya;  Hirt, M. Vincent;  Pasco-Viel, Emmanuel;  Arunachalam, M.;  Li, Junbing;  Wang, Xuzhen;  Freyhof, Joerg;  Saitoh, Kenji;  Simons, Andrew M.;  Miya, Masaki;  He, Shunping;  Mayden, Richard L.;  Yang, L (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA.
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Biogeography  Cyprinidae  Evolution  Hexaploids  Taxonomy  Tetraploids  
New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria (vol 81, pg 10, 2014) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 82, 期号: *, 页码: 343-343
Authors:  Feng, Jin-Mei;  Xiong, Jie;  Zhang, Jin-Yong;  Yang, Ya-Lin;  Yao, Bin;  Zhou, Zhi-Gang;  Miao, Wei;  Zhou, ZG (reprint author), Chinese Acad Agr Sci, Feed Res Inst, Key Lab Feed Biotechnol, Minist Agr, Beijing 100081, Peoples R China.
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Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: Evidence for necessary taxonomic revision in the family and the identification of cryptic species 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 卷号: 81, 期号: *, 页码: 182-194
Authors:  Chang, Chia-Hao;  Li, Fan;  Shao, Kwang-Tsao;  Lin, Yeong-Shin;  Morosawa, Takahiro;  Kim, Sungmin;  Koo, Hyeyoung;  Kim, Won;  Lee, Jae-Seong;  He, Shunping;  Smith, Carl;  Reichard, Martin;  Miya, Masaki;  Sado, Tetsuya;  Uehara, Kazuhiko;  Lavoue, Sebastien;  Chen, Wei-Jen;  Mayden, Richard L.
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Acheilognathinae  Cyprinidae  Cryptic Species  Nuclear Loci  Cytochrome b  European Bitterling