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A phylogeographic, demographic and historical analysis of the short-tailed pit viper (Gloydius brevicaudus): evidence for early divergence and late expansion during the Pleistocene 期刊论文
MOLECULAR ECOLOGY, 2011, 卷号: 20, 期号: 9, 页码: 1905-1922
Authors:  Ding, Li;  Gan, Xiao-Ni;  He, Shun-Ping;  Zhao, Er-Mi;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Hubei, Peoples R China;  clad@ihb.ac.cn;  zhaoermi@cib.ac.cn
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Biogeography  Eastern China  Gloydius Brevicaudus  Phylogeography  Pleistocene Refugia  
Phylogeography of the endemic Gymnocypris chilianensis (Cyprinidae): Sequential westward colonization followed by allopatric evolution in response to cyclical Pleistocene glaciations on the Tibetan Plateau 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2011, 卷号: 59, 期号: 2, 页码: 303-310
Authors:  Zhao, Kai;  Duan, Ziyuan;  Peng, Zuogang;  Gan, Xiaoni;  Zhang, Renyi;  He, Shunping;  Zhao, Xinquan;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China;  clad@ihb.ac.cn;  xqzhao@nwipb.ac.cn
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Mitochondrial Control Region And Cytochrome b  Schizothoracine Fish  Phylogeography  Pleistocene Glaciations  Tibetan Plateau  
Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing 期刊论文
BMC GENOMICS, 2010, 卷号: 11, 页码: -
Authors:  Guo, Baocheng;  Zou, Ming;  Gan, Xiaoni;  He, Shunping;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Fish Phylogenet & Biogeog Grp, Wuhan 430072, Peoples R China
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Tetraodontiform Fishes  Repetitive Elements  Intron Size  Dna Content  Gene  Cotton  Fugu  Duplication  Drosophila  Gossypium  
Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2010, 卷号: 10, 页码: -
Authors:  Tong, Chaobo;  Gan, Xiaoni;  He, Shunping;  He, SP, Chinese Acad Sci, Lab Fish Phylogenet & Biogeog, Inst Hydrobiol, Wuhan 430072, Hubei, Peoples R China
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European Cyprinids  Evolution  Sequences  Elements  Methylation  Phylogeny  Inference  Mrbayes  Ends  Rna  
Olfactory receptor gene family evolution in stickleback and medaka fishes 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2010, 卷号: 53, 期号: 2, 页码: 257-266
Authors:  Chen Ming;  Peng ZuoGang;  He ShunPing;  He, SP, Chinese Acad Sci, Lab Fish Phylogenet & Biogeog, Inst Hydrobiol, Wuhan 430072, Peoples R China
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Olfactory Receptor  Positive Selection  Binding Site  
Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative 期刊论文
GENE, 2009, 卷号: 439, 期号: 1-2, 页码: 102-112
Authors:  Guo, Baocheng;  Tong, Chaobo;  He, Shunping;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Hubei, Peoples R China
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Sox Gene  Tor  Tetraploidy  Gene duplication/deGeneration  
Population genetic structure and geographical differentiation of the Chinese catfish Hemibagrus macropterus (Siluriformes, Bagridae): Evidence for altered drainage patterns 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2009, 卷号: 51, 期号: 2, 页码: 405-411
Authors:  Yang, Lei;  Mayden, Richard L.;  He, Shunping;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7 Donghu S Rd, Wuhan 430072, Hubei, Peoples R China
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Analysis Of Molecular Variance (Amova)  Basin Connection  Changjiang  China  Nested Clade Analysis (Nca)  Range Expansion  
Bead-probe complex capture a couple of SINE and LINE family from genomes of two closely related species of East Asian cyprinid directly using magnetic separation 期刊论文
BMC GENOMICS, 2009, 卷号: 10, 期号: 0
Authors:  Tong, Chaobo;  Guo, Baocheng;  He, Shunping;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China
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Interspersed Repetitive Elements  Ltr Retrotransposable Elements  Eukaryotic Genomes  Transcribable Sequences  Molecular Systematics  Short Retroposons  Rna  Evolution  Transcription  Superfamily  
Phylogeography of the freshwater catfish Hemibagrus guttatus (Siluriformes, Bagridae): Implications for South China biogeography and influence of sea-level changes 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2008, 卷号: 49, 期号: 1, 页码: 393-398
Authors:  Yang, Lei;  He, Shunping;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Hubei, Peoples R China
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Sequence Alignment  Cladistic-analysis  Geographical-distribution  Phenotypic Associations  Mitochondrial  Haplotypes  Taiwan  Cyprinidae  Phylogeny  Evolutionary  
Variation patterns of the mitochondrial 16S rRNA gene with secondary structure constraints and their application to phylogeny of cyprinine fishes (Teleostei : Cypriniformes) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2008, 卷号: 47, 期号: 2, 页码: 472-487
Authors:  Li, Junbing;  Wang, Xuzhen;  Kong, Xianghui;  Zhao, Kai;  He, Shunping;  Mayden, Richard L.;  He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Hubei, Peoples R China
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Mitochondrial 16s Rrna Gene  Secondary Structure Constraints  Phylogeny  Cyprininae