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Characterization and phylogenetic analysis of the complete mitochondrial genome from Rock Scallop (Crassadoma gigantea) using next-generation sequencing
Liao, Dejie1; Zhou, Ying2; Tong, Jingou3; Cao, Shanmao1; Yu, Xiaomu3; Fu, Beide3; Yang, Dazuo4
2018
Source PublicationMITOCHONDRIAL DNA PART B-RESOURCES
ISSN2380-2359
Volume3Issue:2Pages:827-828
AbstractIn this study, the complete 18,495 by mitochondrial genome was determined from Rock scallop (Crassadoma gigantea) using next-generation sequencing technology. The complete mitochondria! genome contained 12 protein-coding genes (PCGs), 2 ribosomal RNA genes, 23 transfer RNA genes, without ATP8 and D-loop, which was similar with most mitochondrial genomes of marine bivalve molluscs. Gene annotations, including gene order, genetic code, start and stop codons and codons bias, were identified. Phylogenetic tree was constructed using Neighbor-Joining (NJ) method based on the PCGs showed the present species clustered within the Pteriomorphia Glade. This work should be of importance not only for the better understanding of the relationships within Pectinidae, but also for the development of useful genetic markers in Rock scallop aquaculture and restoration efforts.
SubtypeArticle
KeywordRock Scallop Mitochondrial Genome Phylogenetic Relationship
DOI10.1080/23802359.2018.1483752
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000445419500002
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Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/56135
Collection鱼类生物学及渔业生物技术研究中心
Affiliation1.Dalian Ocean Univ, Liaoning Shellfish Fine Breed Breeding Engn Techn, Dalian, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Hubei, Peoples R China
4.Dalian Ocean Univ, Key Lab Marine Bioresources Restorat & Habitat Re, Dalian, Peoples R China
Recommended Citation
GB/T 7714
Liao, Dejie,Zhou, Ying,Tong, Jingou,et al. Characterization and phylogenetic analysis of the complete mitochondrial genome from Rock Scallop (Crassadoma gigantea) using next-generation sequencing[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2018,3(2):827-828.
APA Liao, Dejie.,Zhou, Ying.,Tong, Jingou.,Cao, Shanmao.,Yu, Xiaomu.,...&Yang, Dazuo.(2018).Characterization and phylogenetic analysis of the complete mitochondrial genome from Rock Scallop (Crassadoma gigantea) using next-generation sequencing.MITOCHONDRIAL DNA PART B-RESOURCES,3(2),827-828.
MLA Liao, Dejie,et al."Characterization and phylogenetic analysis of the complete mitochondrial genome from Rock Scallop (Crassadoma gigantea) using next-generation sequencing".MITOCHONDRIAL DNA PART B-RESOURCES 3.2(2018):827-828.
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