| Global gene expression profile under low-temperature conditions in the brain of the grass carp (Ctenopharyngodon idellus) | |
Shi, Mijuan1,2; Zhang, Qiangxiang1,3; Li, Yongming1,2; Zhang, Wanting1,2; Liao, Lanjie1,2; Cheng, Yingyin1,2; Jiang, Yanxin1,3; Huang, Xiaoli1,3; Duan, You1,3; Xia, Lei1,3; Ye, Weidong1,3; Wang, Yaping2,3,4; Xia, Xiao-Qin1,2,3
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| Corresponding Author | Wang, Yaping(wangyp@ihb.ac.cn) ; Xia, Xiao-Qin(xqxia@ihb.ac.cn) |
| 2020-09-25 | |
| Source Publication | PLOS ONE
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| ISSN | 1932-6203 |
| Volume | 15Issue:9Pages:13 |
| Abstract | Grass carp is an important commercial fish widely cultivated in China. A wide range of temperatures, particularly extremely low temperatures, have dramatic effects on the aquaculture of this teleost. However, relatively few studies have characterized the molecular responses of grass carp exposed to acute cooling in natural environment. Here, we investigated the transcriptome profiles of the grass carp brain in response to cooling. Through regulation pattern analyses, we identified 2,513 differentially expressed genes (DEGs) that responded to moderate cold stress (12 degrees C), while 99 DEGs were induced by severe low temperature (4 degrees C).The pathway analyses revealed that the DEGs sensitive to moderate cold were largely enriched in steroid biosynthesis, spliceosome, translation, protein metabolism, phagosome, gap junction and estrogen signaling pathways. Additionally, we discerned genes most likely involved in low temperature tolerance, of which the MAPK signaling pathway was dominantly enriched. Further examination and characterization of the candidate genes may help to elucidate the mechanisms underpinning extreme plasticity to severe cold stress in grass carp. |
| DOI | 10.1371/journal.pone.0239730 |
| Funding Organization | National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences |
| Indexed By | SCI ; SCI |
| Language | 英语 |
| Funding Project | National Nature Science Foundation of China[31571275] ; State Key Laboratory of Fresh-water Ecology and Biotechnology[2019FB07] ; National HighTechnology Research and Development Program[2011AA100403] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA08020201] |
| WOS Research Area | Science & Technology - Other Topics |
| WOS Subject | Multidisciplinary Sciences |
| WOS ID | WOS:000576266600023 |
| WOS Keyword | HEAT-SHOCK PROTEINS ; DIFFERENTIAL EXPRESSION ; TRANSCRIPTIONAL RESPONSE ; COLD ; STRESS ; SALMON ; ACCLIMATION ; SPECIFICITY ; ALLOSTASIS ; EVOLUTION |
| Publisher | PUBLIC LIBRARY SCIENCE |
| Funding Organization | National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; National Nature Science Foundation of China ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; State Key Laboratory of Fresh-water Ecology and Biotechnology ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; National HighTechnology Research and Development Program ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/342005/38950 |
| Collection | 水生生物分子与细胞生物学研究中心_期刊论文 |
| Corresponding Author | Wang, Yaping; Xia, Xiao-Qin |
| Affiliation | 1.Chinese Acad Sci, Inst Hydrobiol, Wuhan, Peoples R China 2.Chinese Acad Sci, Innovat Acad Seed Design, Beijing, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China 4.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China |
| Recommended Citation GB/T 7714 | Shi, Mijuan,Zhang, Qiangxiang,Li, Yongming,et al. Global gene expression profile under low-temperature conditions in the brain of the grass carp (Ctenopharyngodon idellus)[J]. PLOS ONE,2020,15(9):13. |
| APA | Shi, Mijuan.,Zhang, Qiangxiang.,Li, Yongming.,Zhang, Wanting.,Liao, Lanjie.,...&Xia, Xiao-Qin.(2020).Global gene expression profile under low-temperature conditions in the brain of the grass carp (Ctenopharyngodon idellus).PLOS ONE,15(9),13. |
| MLA | Shi, Mijuan,et al."Global gene expression profile under low-temperature conditions in the brain of the grass carp (Ctenopharyngodon idellus)".PLOS ONE 15.9(2020):13. |
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