| Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau | |
| Zhang, Zhen-Hua1; Chang, Xin1; Su, Dan-Yan1; Yao, Ru1; Liu, Xu-Dong2; Zhu, Huan3; Liu, Guo-Xiang3; Zhong, Bo-Jian1 | |
| Corresponding Author | Zhong, Bo-Jian(bjzhong@gmail.com) |
| 2020-05-21 | |
| Source Publication | JOURNAL OF SYSTEMATICS AND EVOLUTION
 |
| ISSN | 1674-4918 |
| Pages | 11 |
| Abstract | The harsh environments and high biodiversity of the Qinghai-Tibet Plateau (QTP) provide an ideal natural laboratory for studies on adaptive evolution. Low temperature and intense UV-B radiation are the main abiotic stresses to plants at high altitudes. The rapid development of RNA sequencing has enabled us to investigate the molecular adaptations of plants that thrive in the QTP at the genomic level. Despite the ecological importance of Oocystis algae on the plateau, the genetic mechanisms of the adaptations of these algae to this high-altitude environment remain poorly understood. Here, we sequenced and assembled the transcriptomes of Oocystis marina and Oocystis sp. LXD-20, and undertook comparative transcriptomic and evolutionary analyses to reveal their adaptive strategies. Our results identified 348 positively selected genes in Oocystis algae, and functional analyses indicated that many of these positively selected genes were associated with adaptation to abiotic stresses, such as antioxidative response, DNA repair mechanisms, translation, and post-translational modifications. We also identified the cold-responsive and UV-B-responsive genes in O. marina and Oocystis sp. LXD-20, and revealed the transcriptional regulation strategies under stress conditions. Our analyses provided a wealth of sequence data to serve as reference transcriptomes for future studies, and shed light on the adaptive strategies of green algae that live in the QTP. |
| Keyword | adaptation differential expression green algae positive selection Qinghai-Tibet Plateau transcriptome |
| DOI | 10.1111/jse.12589 |
| Funding Organization | National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) |
| Indexed By | SCI ; SCI |
| Language | 英语 |
| Funding Project | National Natural Science Foundation of China[31970229] ; National Natural Science Foundation of China[31570219] ; Jiangsu Province Key Project for Scientific Research[16KJA180002] ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) |
| WOS Research Area | Plant Sciences |
| WOS Subject | Plant Sciences |
| WOS ID | WOS:000534393700001 |
| WOS Keyword | POSITIVE SELECTION ; ARABIDOPSIS ; GENOME ; PROTEIN ; IDENTIFICATION ; ANNOTATION ; SEQUENCE ; DATABASE ; EXPRESSION ; EVOLUTION |
| Publisher | WILEY |
| Funding Organization | National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/342005/36532 |
| Collection | 藻类生物学及应用研究中心_期刊论文 |
| Corresponding Author | Zhong, Bo-Jian |
| Affiliation | 1.Nanjing Normal Univ, Coll Life Sci, Nanjing 210023, Peoples R China 2.Shanxi Univ, Sch Life Sci, Taiyuan 030006, Peoples R China 3.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China |
| Recommended Citation GB/T 7714 | Zhang, Zhen-Hua,Chang, Xin,Su, Dan-Yan,et al. Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2020:11. |
| APA | Zhang, Zhen-Hua.,Chang, Xin.,Su, Dan-Yan.,Yao, Ru.,Liu, Xu-Dong.,...&Zhong, Bo-Jian.(2020).Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau.JOURNAL OF SYSTEMATICS AND EVOLUTION,11. |
| MLA | Zhang, Zhen-Hua,et al."Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau".JOURNAL OF SYSTEMATICS AND EVOLUTION (2020):11. |
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