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Molecular separation of two long taxonomically debated cyanobacterial genera Cylindrospermopsis and Raphidiopsis (Nostocales) based on the ITS-L phylogeny.
Li, Xiaochuang1,2; Li, Shouchun3; Kong, Renqiu1; Li, Renhui1
2016-07-01
Source PublicationHARMFUL ALGAE
ISSN1568-9883
Volume57Issue:1Pages:88-97
Abstract

The cyanobacterial genera Raphidiopsis and Cylindrospermopsis morphologically resembled each other and are difficult to distinguish, especially when heterocytes do not form in Cylindrospermopsis species. The phylogeny based on multiple gene loci sequences in previous studies cannot divide the strains of these two genera into separate clusters. In the present study, four gene loci 16S rRNA, ITS-L, cpcBA-IGS and rpoC1, sequenced from many Chinese strains (44 Cylindrospermopsis strains and 16 Raphidiopsis strains), were analyzed to infer the phylogenetic relationship between the two genera. According to the 16S rRNA, cpcBA-IGS and rpoC1 gene phylogeny, Cylindrospermopsis and Raphidiopsis strains are intermixed and divide into two or three groups. By contrast, the ITS-L analysis implied that they respectively form two separate and unique clusters. A fragment of 7 bp (RAGAAACT) in ITS-L was conserved for Raphidiopsis strains, which could be distinguished from Cylindrospermopsis strains. A pair of primers targeting the ITS-L fragment specific to Raphidiopsis strains were designed and further verified. (C) 2016 Elsevier B.V. All rights reserved.

KeywordCylindrospermopsis ITS-L Phylogeny Raphidiopsis Taxonomy
DOI10.1016/j.hal.2016.06.003
Funding OrganizationNational Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China
Indexed BySCI
Language英语
Funding ProjectNational Science Foundation China[NSFC 31170189] ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China[2015FB06]
WOS Research AreaMarine & Freshwater Biology
WOS SubjectMarine & Freshwater Biology
WOS IDWOS:000381544600009
WOS KeywordPOPULATION-DYNAMICS ; SUBBA RAJU ; MEDITERRANEA SKUJA ; FLORIDA LAKES ; 1ST REPORT ; RACIBORSKII ; RESERVOIRS ; DOMINANCE ; SEQUENCES ; RELEASE
PublisherELSEVIER SCIENCE BV
Funding OrganizationNational Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; National Science Foundation China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China ; State Key Laboratory of Freshwater Ecology and Biotechnology Grant, China
Citation statistics
Cited Times:8[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/34659
Collection藻类生物学及应用研究中心_期刊论文
Corresponding AuthorLi, Renhui
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Key Lab Algal Biol, Wuhan 430072, Hubei, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Jiangxi Normal Univ, Coll Life Sci, Nanchang 330027, Peoples R China
Recommended Citation
GB/T 7714
Li, Xiaochuang,Li, Shouchun,Kong, Renqiu,et al. Molecular separation of two long taxonomically debated cyanobacterial genera Cylindrospermopsis and Raphidiopsis (Nostocales) based on the ITS-L phylogeny.[J]. HARMFUL ALGAE,2016,57(1):88-97.
APA Li, Xiaochuang,Li, Shouchun,Kong, Renqiu,&Li, Renhui.(2016).Molecular separation of two long taxonomically debated cyanobacterial genera Cylindrospermopsis and Raphidiopsis (Nostocales) based on the ITS-L phylogeny..HARMFUL ALGAE,57(1),88-97.
MLA Li, Xiaochuang,et al."Molecular separation of two long taxonomically debated cyanobacterial genera Cylindrospermopsis and Raphidiopsis (Nostocales) based on the ITS-L phylogeny.".HARMFUL ALGAE 57.1(2016):88-97.
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