IHB OpenIR  > 水生生物多样性与资源保护研究中心  > 期刊论文
Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic
Gentekaki, Eleni1; Kolisko, Martin2; Gong, Yingchun3; Lynn, Denis4,5
2017
Source PublicationMOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
Volume106Issue:1Pages:1-5
Abstract

The phylum Ciliophora is one of the most broadly studied protozoan lineages. The era of molecular investigation has brought forth a major ongoing debate: is the subclass Peritrichia Stein, 1859 monophyletic? Numerous analyses mostly using the small subunit (SSU) rRNA gene have failed to recover the Mobilida and Sessilida, the two peritrich orders, as sister clades. Here we have sequenced five peritrich species - three sessilids and two mobilids. We constructed a supermatrix of 158 genes and 44,696 characters for 24 ciliate species, and as outgroup taxa, nine species from the Apicomplexa and four from the Dinophyceae. Our analyses using both maximum likelihood and Bayesian methods recover a monophyletic class Oligohymenophorea and two robust clades within it. The first Glade is a monophyletic Peritrichia with the orders Sessilida and Mobilida maximally supported as sister clades. The second oligohymenophorean Glade includes species of the subclasses Scuticociliatia and Hymenostomatia, which are sister clades. Our analyses resolve a long-standing debate in ciliate molecular phylogenetics and provide support for the classical view that the morphological features of the two peritrich orders Mobilida and Sessilida arose by descent from the same common ancestor and are not the result of convergence. (C) 2016 Elsevier Inc. All rights reserved.

KeywordCiliophora Peritrichia Sessilida Mobilida Phylogenomics
DOI10.1016/j.ympev.2016.09.016
Funding OrganizationNatural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences
Indexed BySCI
Language英语
Funding ProjectNatural Sciences and Engineering Research Council of Canada Discovery grant[6544-13] ; National Natural Science Foundation of China[30900130] ; Chinese Academy of Sciences
WOS Research AreaBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS IDWOS:000388059500001
WOS KeywordRNA GENE-SEQUENCES ; TRICHODINA-PEDICULUS CILIOPHORA ; PHYLOGENETIC-RELATIONSHIPS ; MURMANICA CILIOPHORA ; MOLECULAR PHYLOGENY ; SPECIES TREES ; OLIGOHYMENOPHOREA ; RECONSIDERATION ; RECONSTRUCTION ; EPICARCHESIUM
PublisherACADEMIC PRESS INC ELSEVIER SCIENCE
Funding OrganizationNatural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences
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Cited Times:26[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/34068
Collection水生生物多样性与资源保护研究中心_期刊论文
Corresponding AuthorGentekaki, Eleni
Affiliation1.Mae Fah Luang Univ, Sch Sci, Chiang Rai 57100, Thailand
2.Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada
3.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China
4.Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada
5.Univ British Columbia, Dept Zool, Vancouver, BC V6T 1Z4, Canada
Recommended Citation
GB/T 7714
Gentekaki, Eleni,Kolisko, Martin,Gong, Yingchun,et al. Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2017,106(1):1-5.
APA Gentekaki, Eleni,Kolisko, Martin,Gong, Yingchun,&Lynn, Denis.(2017).Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic.MOLECULAR PHYLOGENETICS AND EVOLUTION,106(1),1-5.
MLA Gentekaki, Eleni,et al."Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic".MOLECULAR PHYLOGENETICS AND EVOLUTION 106.1(2017):1-5.
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