De novo Assembly and Analysis of Amur Sturgeon (Acipenser schrenckii) Transcriptome in Response to Mycobacterium Marinum Infection to Identify Putative Genes Involved in Immunity | |
Zhang, Qianqian1; Wang, Xiehao1,5; Zhang, Defeng2; Long, Meng1,3,4; Wu, Zhenbing1,5; Feng, Yuqing1,5; Hao, Jingwen1,5; Wang, Shuyi1,5; Liao, Qian1,5; Li, Aihua1 | |
2019-08-01 | |
Source Publication | JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
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ISSN | 1017-7825 |
Volume | 29Issue:8Pages:1324-1334 |
Abstract | Fish mycobacteriosis is a common bacterial disease in many species of freshwater and marine fish and has caused severe loss of fish production. Mycobacterium marinum has been the most prevalent pathogen observed in several outbreaks of mycobacteriosis of farmed sturgeons in China. However, the immune responses and pathology of sturgeons in mycobacterial infection are rarely studied. Therefore, we used the Illumina RNA-seq method to analyze the transcriptome profile of Acipenser schrenckii challenged with Mycobacterium marinum. To begin, 168,220 non-redundant contigs were acquired from the infection and control groups, and among these, 33,225 contigs have acquired annotations. A total of 4,043 differently expressed (DE) contigs between the two groups were identified, and among these, 2479 were upregulated and 1564 were down-regulated in the infected fish. A total of 1,340 DE contigs with acquired annotations in KEGG were enriched for 124 pathways including the TNF signaling pathway, and the Toll-like receptor signaling pathway. The roles of DE genes involved in significant pathways and other processes were discussed. The 2,209 DE contigs that have yet to acquire proper annotation may represent candidate genes associated with infection in sturgeons and are expected to serve as immunogenetic resources for further study. To our best knowledge, this is the first transcriptome study on sturgeons under bacterial infection. |
Keyword | Amur sturgeon transcriptome Mycobacterium marinum infection immune mechanism |
DOI | 10.4014/jmb.1903.03034 |
Funding Organization | Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; 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Indexed By | SCI |
Language | 英语 |
Funding Project | Key Project of Scientific & Technological Innovation of Hubei Province[2018ABA101] ; FEBL Project[2016FBZ04] ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture[201503] ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture[201503] ; Jiangsu Marine and Fisheries Bureau Project[D2017-3] |
WOS Research Area | Biotechnology & Applied Microbiology ; Microbiology |
WOS Subject | Biotechnology & Applied Microbiology ; Microbiology |
WOS ID | WOS:000483421100018 |
WOS Keyword | TUBERCULOSIS ; EXPRESSION ; ZEBRAFISH ; SECRETION ; CELLS |
Publisher | KOREAN SOC MICROBIOLOGY & BIOTECHNOLOGY |
Funding Organization | Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; 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Jiangsu Marine and Fisheries Bureau Project ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; 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Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; Key Project of Scientific & Technological Innovation of Hubei Province ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; FEBL Project ; Key Laboratory of Fishery Drug Development, Ministry of Agriculture ; 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Key Laboratory of Aquatic Animal Immune Technology, Ministry of Agriculture ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project ; Jiangsu Marine and Fisheries Bureau Project |
Citation statistics | |
Document Type | 期刊论文 |
Identifier | http://ir.ihb.ac.cn/handle/342005/33376 |
Collection | 水环境工程研究中心_期刊论文 |
Corresponding Author | Li, Aihua |
Affiliation | 1.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Hubei, Peoples R China 2.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Guangzhou, Guangdong, Peoples R China 3.Guangdong Ocean Univ, Shenzhen Inst, Shenzhen 518120, Peoples R China 4.Shenzhen Dapeng New Dist Sci & Technol Innovat Se, Shenzhen 518120, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
Recommended Citation GB/T 7714 | Zhang, Qianqian,Wang, Xiehao,Zhang, Defeng,et al. De novo Assembly and Analysis of Amur Sturgeon (Acipenser schrenckii) Transcriptome in Response to Mycobacterium Marinum Infection to Identify Putative Genes Involved in Immunity[J]. JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY,2019,29(8):1324-1334. |
APA | Zhang, Qianqian.,Wang, Xiehao.,Zhang, Defeng.,Long, Meng.,Wu, Zhenbing.,...&Li, Aihua.(2019).De novo Assembly and Analysis of Amur Sturgeon (Acipenser schrenckii) Transcriptome in Response to Mycobacterium Marinum Infection to Identify Putative Genes Involved in Immunity.JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY,29(8),1324-1334. |
MLA | Zhang, Qianqian,et al."De novo Assembly and Analysis of Amur Sturgeon (Acipenser schrenckii) Transcriptome in Response to Mycobacterium Marinum Infection to Identify Putative Genes Involved in Immunity".JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 29.8(2019):1324-1334. |
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JMB029-08-18_FDOC_1.(2664KB) | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text |
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