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Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes
Li, Tongtong1,2; Long, Meng1; Li, Huan2; Gatesoupe, Francois-Joel3; Zhang, Xujie4; Zhang, Qianqian1,5; Feng, Dongyue6; Li, Aihua1,5
2017-03-17
Source PublicationFRONTIERS IN MICROBIOLOGY
ISSN1664-302X
Volume8Issue:1Pages:11
Abstract

Gut microbiota play key roles in host nutrition and metabolism. However, little is known about the relationship between host genetics, gut microbiota and metabolic profiles. Here, we used high-throughput sequencing and gas chromatography/mass spectrometry approaches to characterize the microbiota composition and the metabolite profiles in the gut of five cyprinid fish species with three different feeding habits raised under identical husbandry conditions. Our results showed that host species and feeding habits significantly affect not only gut microbiota composition but also metabolite profiles (ANOSIM, p <= 0.05). Mantel test demonstrated that host phylogeny, gut microbiota, and metabolite profiles were significantly related to each other (p <= 0.05). Additionally, the carps with the same feeding habits had more similarity in gut microbiota composition and metabolite profiles. Various metabolites were correlated positively with bacterial taxa involved in food degradation. Our results shed new light on the microbiome and metabolite profiles in the gut content of cyprinid fishes, and highlighted the correlations between host genotype, fish gut microbiome and putative functions, and gut metabolite profiles.

Keywordcorrelation host phylogeny gut microbiota metabolite profiles cyprinid fishes
DOI10.3389/fmicb.2017.00454
Funding OrganizationFEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China
Indexed BySCI
Language英语
Funding ProjectFEBL project[2016FBZ04] ; Jiangsu Marine and Fisheries Bureau project[D2015-11] ; Natural Science Foundation of China[30670112] ; Natural Science Foundation of China[31070112]
WOS Research AreaMicrobiology
WOS SubjectMicrobiology
WOS IDWOS:000396609200001
WOS KeywordCHROMATOGRAPHY-MASS SPECTROMETRY ; GASTROINTESTINAL MICROBIOTA ; INTESTINAL MICROBIOTA ; BACTERIAL COMMUNITIES ; EVOLUTION ; METABONOMICS ; DIVERSITY ; CARP ; INTEGRATION ; MICROFLORA
PublisherFRONTIERS MEDIA SA
Funding OrganizationFEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; FEBL project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Jiangsu Marine and Fisheries Bureau project ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China
Citation statistics
Cited Times:10[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/32898
Collection其他_期刊论文
Corresponding AuthorFeng, Dongyue; Li, Aihua
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
2.Chinese Acad Sci, Chengdu Inst Biol, Key Lab Environm & Appl Microbiol, & Environm Microbiol Key Lab Sichuan Prov, Chengdu, Peoples R China
3.Univ Pau & Pays Adour, Inst Natl Rech Agronom, Nutr Metabolisme & Aquaculture, Saint Pee Nivelle, France
4.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
5.Huazhong Agr Univ, Freshwater Aquaculture Collaborat Innovat Ctr Hub, Wuhan, Peoples R China
6.Natl Fisheries Tech Extens Ctr, Minist Agr, Beijing, Peoples R China
Recommended Citation
GB/T 7714
Li, Tongtong,Long, Meng,Li, Huan,et al. Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes[J]. FRONTIERS IN MICROBIOLOGY,2017,8(1):11.
APA Li, Tongtong.,Long, Meng.,Li, Huan.,Gatesoupe, Francois-Joel.,Zhang, Xujie.,...&Li, Aihua.(2017).Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes.FRONTIERS IN MICROBIOLOGY,8(1),11.
MLA Li, Tongtong,et al."Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes".FRONTIERS IN MICROBIOLOGY 8.1(2017):11.
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