IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Complete genome sequence analysis of the fish pathogen Flavobacterium columnare provides insights into antibiotic resistance and pathogenicity related genes
Zhang, Yulei1; Zhao, Lijuan1,2; Chen, Wenjie2; Huang, Yunmao2; Yang, Ling2; Sarathbabu, V.2; Wu, Zaohe2; Li, Jun2,4,5; Nie, Pin3; Lin, Li1,2,5,6
2017-10-01
Source PublicationMICROBIAL PATHOGENESIS
ISSN0882-4010
Volume111Issue:1Pages:203-211
Abstract

We analyzed here the complete genome sequences of a highly virulent Flavobacterium columnare Pf1 strain isolated in our laboratory. The complete genome consists of a 3,171,081 bp circular DNA with 2784 predicted protein-coding genes. Among these, 286 genes were predicted as antibiotic resistance genes, including 32 RND-type efflux pump related genes which were associated with the export of amino glycosides, indicating inducible aminoglycosides resistances in F. columnare. On the other hand, 328 genes were predicted as pathogenicity related genes which could be classified as virulence factors, gliding motility proteins, adhesins, and many putative secreted proteases. These genes were probably involved in the colonization, invasion and destruction of fish tissues during the infection of E columnare. Apparently, our obtained complete genome sequences provide the basis for the explanation of the interactions between the F. columnare and the infected fish. The predicted antibiotic resistance and pathogenicity related genes will shed a new light on the development of more efficient preventional strategies against the infection of E columnare, which is a major worldwide fish pathogen. (C) 2017 Elsevier Ltd. All rights reserved.

KeywordFlavobacterium columnare Complete genome Antibiotic resistance genes Pathogenicity related genes
DOI10.1016/j.micpath.2017.08.035
Funding OrganizationNational Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; 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Indexed BySCI
Language英语
Funding ProjectNational Natural Science Fund[31572657] ; National Natural Science Fund[31372563] ; National Natural Science Fund[31602190] ; Administration of Ocean and Fisheries of Guangdong Province[A201512C003] ; Administration of Ocean and Fisheries of Guangdong Province[2015-115] ; Special fund for Science and technology from Hubei Province[2015BBA228] ; Wuhan Science and Technology Bureau[2016020101010089] ; Department of Education of Guangdong Province[KA170500G] ; Chinese Academy of Sciences (CAS)[XDA08010207]
WOS Research AreaImmunology ; Microbiology
WOS SubjectImmunology ; Microbiology
WOS IDWOS:000412960400029
WOS KeywordDEPENDENT CLP PROTEASE ; AC LYASE ACTIVITY ; ESCHERICHIA-COLI ; ACINETOBACTER-BAUMANNII ; LISTERIA-MONOCYTOGENES ; FLEXIBACTER-COLUMNARIS ; KYOTO ENCYCLOPEDIA ; CHANNEL CATFISH ; PURIFICATION ; MEMBRANE
PublisherACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
Funding OrganizationNational Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; National Natural Science Fund ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; 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Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Administration of Ocean and Fisheries of Guangdong Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Wuhan Science and Technology Bureau ; 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Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Chinese Academy of Sciences (CAS) ; 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Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Special fund for Science and technology from Hubei Province ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Wuhan Science and Technology Bureau ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Department of Education of Guangdong Province ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS) ; Chinese Academy of Sciences (CAS)
Citation statistics
Cited Times:4[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/32662
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorZhao, Lijuan; Nie, Pin; Lin, Li
Affiliation1.Huazhong Agr Univ, Coll Fisheries, Wuhan 430070, Hubei, Peoples R China
2.Zhongkai Univ Agr & Engn, Coll Anim Sci & Technol, Guangzhou Key Lab Aquat Anim Dis & Waterfowl Bree, Guangdong Prov Key Lab Waterfowl Hlth Breeding, Guangzhou 510225, Guangdong, Peoples R China
3.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China
4.Lake Super State Univ, Sch Biol Sci, Sault Ste Marie, MI 49783 USA
5.Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266071, Peoples R China
6.Guangdong Acad Agr Sci, Agrobiol Gene Res Ctr, Guangzhou 510640, Guangdong, Peoples R China
Recommended Citation
GB/T 7714
Zhang, Yulei,Zhao, Lijuan,Chen, Wenjie,et al. Complete genome sequence analysis of the fish pathogen Flavobacterium columnare provides insights into antibiotic resistance and pathogenicity related genes[J]. MICROBIAL PATHOGENESIS,2017,111(1):203-211.
APA Zhang, Yulei.,Zhao, Lijuan.,Chen, Wenjie.,Huang, Yunmao.,Yang, Ling.,...&Lin, Li.(2017).Complete genome sequence analysis of the fish pathogen Flavobacterium columnare provides insights into antibiotic resistance and pathogenicity related genes.MICROBIAL PATHOGENESIS,111(1),203-211.
MLA Zhang, Yulei,et al."Complete genome sequence analysis of the fish pathogen Flavobacterium columnare provides insights into antibiotic resistance and pathogenicity related genes".MICROBIAL PATHOGENESIS 111.1(2017):203-211.
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