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Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV)
Wang, Yeda1,2,3,4; Zhang, Hao5; Lu, Yuanan6; Wang, Fang1,2,3,4; Liu, Liyue7; Liu, Jingxia1,3; Liu, Xueqin1,2,3,4
2017-10-01
Source PublicationFISH & SHELLFISH IMMUNOLOGY
ISSN1050-4648
Volume69Issue:1Pages:35-45
Abstract

Spring viremia of carp virus (SVCV) is the pathogen of spring viremia of carp (SVC) and often causes acute hemorrhagic symptoms in various kinds of cyprinids and induces serious environmental and economic losses. However, the molecular mechanisms of infection remain poorly understood, especially at the individual level. In this study, zebrafish was employed as the infection model to explore the pathogenesis of SVCV. 4 groups of zebrafish tissues were set and RNA sequencing (RNA-Seq) technology was employed to analyze the differentially expressed genes (DEGs) after SVCV-infection. A total of 360,971,498 clean reads were obtained from 12 samples, 382 DEGs in the brain and 926 DEGs in the spleen were identified. These DEGs were annotated into three ontologies after gene ontology (GO) enrichment analysis. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that these DEGs were primarily related to Influenza A pathway and Herpes simplex infection pathway in brain and Tuberculosis and Toxoplasmosis pathways in spleen, and all of these pathways may be involved in response to pathogen invasion. At the same time, 3' and 5' alternative splicing (AS) events were significantly up regulated in the spleen. The transcriptome analysis results demonstrated changes and tissue-specific influences caused by SVCV in vivo, which provided us with more information to understand the complex relationships between SVCV and its host. (C) 2017 Elsevier Ltd. All rights reserved.

KeywordDanio rerio SVCV Transcriptome Alternative splicing DEG
DOI10.1016/j.fsi.2017.07.055
Funding OrganizationNatural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; 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Indexed BySCI
Language英语
Funding ProjectNatural Science Foundation of China[31172433] ; Fundamental Research Funds for the Central Universities[2013PY071] ; Hubei Province[2015BBA234] ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation[42000481-7-2014RC007] ; Fundamental Research Funds for the Cairo University[2662015PY002]
WOS Research AreaFisheries ; Immunology ; Marine & Freshwater Biology ; Veterinary Sciences
WOS SubjectFisheries ; Immunology ; Marine & Freshwater Biology ; Veterinary Sciences
WOS IDWOS:000412960200005
WOS KeywordPAPULOSUM CYPRINI CELLS ; IFN-STIMULATED GENES ; FISH RHABDOVIRUS ; PROTEIN ; INTERFERON ; EXPRESSION ; SEQUENCE ; INSIGHTS ; PATHWAY ; GENOME
PublisherACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
Funding OrganizationNatural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; Fundamental Research Funds for the Cairo University ; 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Fundamental Research Funds for the Cairo University ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Fundamental Research Funds for the Central Universities ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Hubei Province ; Huazhong Agricultural University Scientific & Technological Self innovation Foundation ; 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Cited Times:17[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/32650
Collection其他_期刊论文
Corresponding AuthorLiu, Xueqin
Affiliation1.Huazhong Agr Univ, Coll Fisheries, Wuhan 430070, Hubei, Peoples R China
2.Freshwater Aquaculture Collaborat Innovat Ctr Hub, Wuhan 430070, Hubei, Peoples R China
3.Minist Agr, Key Lab Freshwater Anim Breeding, Wuhan 430070, Hubei, Peoples R China
4.Hubei Engn Technol Res Ctr Aquat Anim Dis Control, Wuhan 430070, Hubei, Peoples R China
5.Huazhong Agr Univ, Coll Vet Med, State Key Lab Agr Microbiol, Wuhan 430070, Hubei, Peoples R China
6.Univ Hawaii Manoa, Dept Publ Hlth Sci, Honolulu, HI 96822 USA
7.Chinese Acad Sci, Inst Hydrobiol, China Zebrafish Resource Ctr, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430070, Hubei, Peoples R China
Recommended Citation
GB/T 7714
Wang, Yeda,Zhang, Hao,Lu, Yuanan,et al. Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV)[J]. FISH & SHELLFISH IMMUNOLOGY,2017,69(1):35-45.
APA Wang, Yeda.,Zhang, Hao.,Lu, Yuanan.,Wang, Fang.,Liu, Liyue.,...&Liu, Xueqin.(2017).Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV).FISH & SHELLFISH IMMUNOLOGY,69(1),35-45.
MLA Wang, Yeda,et al."Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV)".FISH & SHELLFISH IMMUNOLOGY 69.1(2017):35-45.
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