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Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development
Li, Xinghao1,2,3; Zhou, Li1,2; Yu, Yuhe1,2; Ni, Jiajia4,5; Xu, Wenjie1,2,3; Yan, Qingyun1,2,6
2017-07-01
Source PublicationMICROBIAL ECOLOGY
ISSN0095-3628
Volume74Issue:1Pages:239-249
Abstract

To understand how a bacteria-free fish gut ecosystem develops microbiota as the fish ages, we performed a 1year study on the gut microbiota of hatchling gibel carp (Carassius auratus gibelio). Our results indicate that the gut microbial diversity increases significantly as the fish develop. The gut microbial community composition showed significant shifts corresponding to host age and appeared to shift at two time points despite consistent diet and environmental conditions, suggesting that some features of the gut microbial community may be determined by the host's development. Dietary and environmental changes also seem to cause significant shifts in the fish gut microbial community. This study revealed that the gut microbiota of gibel carp assemble into distinct communities at different times during the host's development and that this process is less affected by the surrounding environment than by the host diet and development. Community phylogenetic analyses based on the net relatedness index further showed that environmental filtering (host selection) deterministically governs the gut microbial community composition. More importantly, the influence of hostassociated deterministic filtering tends to weaken significantly over the course of the host's development. However, further studies are needed to assess whether this host development dependent shift in gut microbiota will still exist under different rearing strategies.

KeywordGutmicrobiota High-throughput sequencing 16S rRNAgene Gibel carp Phylogenetic diversity Net relatedness index
DOI10.1007/s00248-016-0924-4
Funding OrganizationNational Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation
Indexed BySCI
Language英语
Funding ProjectNational Natural Science Foundation of China[31400109] ; National Natural Science Foundation of China[1372202] ; National Natural Science Foundation of China[31500417] ; Guangdong Natural Science Foundation[2014A030310281]
WOS Research AreaEnvironmental Sciences & Ecology ; Marine & Freshwater Biology ; Microbiology
WOS SubjectEcology ; Marine & Freshwater Biology ; Microbiology
WOS IDWOS:000403255500023
WOS KeywordINTESTINAL MICROBIOTA ; GASTROINTESTINAL MICROBIOTA ; BACTERIAL COMMUNITIES ; GADUS-MORHUA ; FISH ; ZEBRAFISH ; LARVAE ; EVOLUTION ; ECOLOGY ; DETERMINANT
PublisherSPRINGER
Funding OrganizationNational Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation ; Guangdong Natural Science Foundation
Citation statistics
Cited Times:15[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/31776
Collection淡水生态学研究中心_期刊论文
Corresponding AuthorYan, Qingyun
Affiliation1.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China
2.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430072, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
4.Guangdong Inst Microbiol, Guangdong Prov Key Lab Microbial Culture Collect, Guangzhou 510070, Guangdong, Peoples R China
5.State Key Lab Appl Microbiol Southern China, Guangzhou 510070, Guangdong, Peoples R China
6.Sun Yat Sen Univ, Sch Environm Sci & Engn, Environm Microbiome Res Ctr, Guangzhou 510006, Guangdong, Peoples R China
Recommended Citation
GB/T 7714
Li, Xinghao,Zhou, Li,Yu, Yuhe,et al. Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development[J]. MICROBIAL ECOLOGY,2017,74(1):239-249.
APA Li, Xinghao,Zhou, Li,Yu, Yuhe,Ni, Jiajia,Xu, Wenjie,&Yan, Qingyun.(2017).Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development.MICROBIAL ECOLOGY,74(1),239-249.
MLA Li, Xinghao,et al."Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development".MICROBIAL ECOLOGY 74.1(2017):239-249.
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