IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Brain and intestine transcriptome analyses and identification of genes involved in feed conversion efficiency of Yellow River carp (Cyprinus carpio haematopterus)
Zhou, Ying1,2; Luo, Weiwei1,2; Yu, Xiaomu1; Liu, Qingshan1,2; Tong, Jingou1
2019-03-01
Source PublicationCOMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
ISSN1744-117X
Volume29Issue:1Pages:221-227
Abstract

Feed cost is one of the largest variable input costs in aquaculture. In general, dietary energy is directed toward protein deposition and muscle growth. However, most of the dietary energy will be used to support body maintenance if feed conversion efficiency (FCE) is relatively low. Thus, improving feed efficiency will make great contributions to the productivity, profitability, and sustainability of fish farming industry. In the present study, we performed comparative transcriptome analyses of brain and intestine tissues from extreme FCE groups and identified differentially expressed genes (DEGs) and regulatory pathways that may be involved in FCE and related traits in one of the important common carp strains of China, the Yellow River carp (Cyprinus carpio haematopterus). Totally, 557 and 341 DEGs between high and low FCE groups were found in brain and intestine tissues, respectively, including 66 up- and 491 down-regulated in brain of high FCE group and 282 up- and 59 down-regulated in intestine of high FCE group (p < 0.01, FDR < 0.05). These DEGs are mainly involved in metabolic pathway, organismal system and genetic information processing pathway. Finally, 20 key DEGs potentially involved in FCE of Yellow River carp were identified from these two tissues. Expression patterns (up or down regulation in the high or low FCE group) of these DEGs have been successfully validated by quantitative real-time PCR of 10 unigenes. This study provides insights into the genetic mechanisms underlying feed efficiency in Yellow River carp and supplies valuable FCE-related candidate gene resources for potential molecular breeding studies.

KeywordTranscriptome Feed conversion efficiency Brain Intestine
DOI10.1016/j.cbd.2018.12.004
Funding OrganizationState Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences
Indexed BySCI
Language英语
Funding ProjectState Key Laboratory of Freshwater Ecology and Biotechnology[2016FBZ05] ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences[XDA08010405]
WOS Research AreaBiochemistry & Molecular Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Genetics & Heredity
WOS IDWOS:000460492500021
WOS KeywordSUSTAINABLE INTENSIFICATION ; GROWTH ; METABOLISM ; PERFORMANCE ; AQUACULTURE ; TRANSPORT ; RESPONSES ; IMPROVE ; PATHWAY ; QUALITY
PublisherELSEVIER SCIENCE INC
Funding OrganizationState Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences ; Special Fund for Strategic Pilot Technology of Chinese Academy of Sciences
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/31634
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorTong, Jingou
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
Recommended Citation
GB/T 7714
Zhou, Ying,Luo, Weiwei,Yu, Xiaomu,et al. Brain and intestine transcriptome analyses and identification of genes involved in feed conversion efficiency of Yellow River carp (Cyprinus carpio haematopterus)[J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,2019,29(1):221-227.
APA Zhou, Ying,Luo, Weiwei,Yu, Xiaomu,Liu, Qingshan,&Tong, Jingou.(2019).Brain and intestine transcriptome analyses and identification of genes involved in feed conversion efficiency of Yellow River carp (Cyprinus carpio haematopterus).COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,29(1),221-227.
MLA Zhou, Ying,et al."Brain and intestine transcriptome analyses and identification of genes involved in feed conversion efficiency of Yellow River carp (Cyprinus carpio haematopterus)".COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 29.1(2019):221-227.
Files in This Item: Download All
File Name/Size DocType Version Access License
1-s2.0-S1744117X1830(1140KB)期刊论文出版稿开放获取CC BY-NC-SAView Download
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Zhou, Ying]'s Articles
[Luo, Weiwei]'s Articles
[Yu, Xiaomu]'s Articles
Baidu academic
Similar articles in Baidu academic
[Zhou, Ying]'s Articles
[Luo, Weiwei]'s Articles
[Yu, Xiaomu]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Zhou, Ying]'s Articles
[Luo, Weiwei]'s Articles
[Yu, Xiaomu]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: 1-s2.0-S1744117X18300637-main.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.