IHB OpenIR  > 水生生物分子与细胞生物学研究中心  > 期刊论文
A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement
Feng, Lifang1,2,3; Wang, Guangying2; Hamilton, Eileen P.4; Xiong, Jie2; Yan, Guanxiong2; Chen, Kai2; Chen, Xiao1; Dui, Wen1; Plemens, Amber1; Khadr, Lara1; Dhanekula, Arjune1; Juma, Mina1; Hung Quang Dang5; Kapler, Geoffrey M.5; Orias, Eduardo4; Miao, Wei2; Liu, Yifan1
2017-09-19
Source PublicationNUCLEIC ACIDS RESEARCH
ISSN0305-1048
Volume45Issue:16Pages:9481-9502
Abstract

Developmentally programmed genome rearrangement accompanies differentiation of the silent germline micronucleus into the transcriptionally active somatic macronucleus in the ciliated protozoan Tetrahymena thermophila. Internal eliminated sequences (IES) are excised, followed by rejoining of MAC-destined sequences, while fragmentation occurs at conserved chromosome breakage sequences, generating macronuclear chromosomes. Some macronuclear chromosomes, referred to as non-maintained chromosomes (NMC), are lost soon after differentiation. Large NMC contain genes implicated in development-specific roles. One such gene encodes the domesticated piggyBac transposase TPB6, required for heterochromatin-dependent precise excision of IES residing within exons of functionally important genes. These conserved exonic IES determine alternative transcription products in the developing macronucleus; some even contain freestanding genes. Examples of precise loss of some exonic IES in the micronucleus and retention of others in the macronucleus of related species suggest an evolutionary analogy to introns. Our results reveal that germline-limited sequences can encode genes with specific expression patterns and development-related functions, which may be a recurring theme in eukaryotic organisms experiencing programmed genome rearrangement during germline to soma differentiation.

DOI10.1093/nar/gkx652
Funding OrganizationNatural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; 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Indexed BySCI
Language英语
Funding ProjectNatural Science Foundation of China[31301930] ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; NSF[MCB 161311] ; NSF[MCB 1411565] ; University of California Santa Barbara Academic Senate ; Projects of International Cooperation and Exchanges, Ministry of Science and Technology of China[2013DFG32390] ; NIH[R01 GM087343] ; Department of Pathology at the University of Michigan
WOS Research AreaBiochemistry & Molecular Biology
WOS SubjectBiochemistry & Molecular Biology
WOS IDWOS:000411096400026
WOS KeywordPROGRAMMED DNA ELIMINATION ; DICER-LIKE PROTEIN ; CHROMOSOME BREAKAGE ; PARAMECIUM-TETRAURELIA ; HISTONE H3 ; CILIATE TETRAHYMENA ; NUCLEAR DIFFERENTIATION ; V(D)J RECOMBINATION ; READ ALIGNMENT ; INTRON LOSS
PublisherOXFORD UNIV PRESS
Funding OrganizationNatural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; Youth Innovation Promotion Association, Chinese Academy of Sciences ; 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Cited Times:12[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/31553
Collection水生生物分子与细胞生物学研究中心_期刊论文
Corresponding AuthorMiao, Wei; Liu, Yifan
Affiliation1.Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
2.Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Hubei, Peoples R China
3.Zhejiang Gongshang Univ, Sch Food Sci & Biotechnol, Hangzhou 310018, Zhejiang, Peoples R China
4.Univ Calif Santa Barbara, Dept Mol Cellular & Dev Biol, Santa Barbara, CA 93106 USA
5.Texas A&M Univ, Hlth Sci Ctr, Dept Mol & Cellular Med, College Stn, TX 77843 USA
Recommended Citation
GB/T 7714
Feng, Lifang,Wang, Guangying,Hamilton, Eileen P.,et al. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement[J]. NUCLEIC ACIDS RESEARCH,2017,45(16):9481-9502.
APA Feng, Lifang.,Wang, Guangying.,Hamilton, Eileen P..,Xiong, Jie.,Yan, Guanxiong.,...&Liu, Yifan.(2017).A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement.NUCLEIC ACIDS RESEARCH,45(16),9481-9502.
MLA Feng, Lifang,et al."A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement".NUCLEIC ACIDS RESEARCH 45.16(2017):9481-9502.
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