IHB OpenIR  > 水生生物分子与细胞生物学研究中心  > 期刊论文
The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations
Chen, Yaxin1,2; Shi, Mijuan1; Zhang, Wanting1; Cheng, Yingyin1; Wang, Yaping1; Xia, Xiao-Qin1
2017-07-27
Source PublicationDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
ISSN1758-0463
Issue1Pages:8
Abstract

As one of the four major Chinese carps of important economic value, the grass carp (Ctenopharyngodon idellus) has attracted increasing attention from the scientific community. Recently, the draft genome has been released as a milestone in research of grass carp. In order to facilitate the utilization of these genome data, we developed the grass carp genome database (GCGD). GCGD provides visual presentation of the grass carp genome along with annotations and amino acid sequences of predicted protein-coding genes. Other related genetic and genomic data available in this database include the genetic linkage maps, microsatellite genetic markers (i.e. Short Sequence Repeats, SSRs), and some selected transcriptomic datasets. A series of tools have been integrated into GCGD for visualization, analysis and retrieval of data, e.g. JBrowse for navigation of genome annotations, BLAST for sequence alignment, EC2KEGG for comparison of metabolic pathways, IDConvert for conversion of terms across databases and ReadContigs for extraction of sequences from the grass carp genome.

DOI10.1093/database/bax051
Funding OrganizationChinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program
Indexed BySCI
Language英语
Funding ProjectChinese Academy of Sciences[XDA08020201] ; Chinese Academy of Sciences[Y22302] ; National High-Technology Research and Development Program (863 Program)[2011AA100403] ; National Natural Science Foundation of China[31571275] ; 100-talent Program
WOS Research AreaMathematical & Computational Biology
WOS SubjectMathematical & Computational Biology
WOS IDWOS:000407487700001
WOS KeywordMODEL ORGANISM DATABASE ; CTENOPHARYNGODON-IDELLUS ; PROVIDES INSIGHTS ; CYPRINUS-CARPIO ; DRAFT GENOME ; COMMON CARP ; SEQUENCE ; INFORMATION ; EXPRESSION ; EVOLUTION
PublisherOXFORD UNIV PRESS
Funding OrganizationChinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/31411
Collection水生生物分子与细胞生物学研究中心_期刊论文
Corresponding AuthorXia, Xiao-Qin
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
Recommended Citation
GB/T 7714
Chen, Yaxin,Shi, Mijuan,Zhang, Wanting,et al. The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations[J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,2017(1):8.
APA Chen, Yaxin,Shi, Mijuan,Zhang, Wanting,Cheng, Yingyin,Wang, Yaping,&Xia, Xiao-Qin.(2017).The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations.DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION(1),8.
MLA Chen, Yaxin,et al."The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations".DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION .1(2017):8.
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