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Genome size and identification of abundant repetitive sequences in Vallisneria spinulosa
Feng, RuiJuan1; Wang, Xin2,3; Tao, Min4; Du, Guanchao5; Wang, Qishuo1
2017-10-31
Source PublicationPEERJ
ISSN2167-8359
Volume5Issue:1Pages:14
Abstract

Vallisneria spinulosa is a freshwater aquatic plant of ecological and economic importance. However, there is limited cytogenetic and genomics information on Vallisneria. In this study, we measured the nuclear DNA content of Vallisneria spinulosa by flow cytometry, performed a de novo assembly, and annotated repetitive sequences by using a combination of next-generation sequencing (NGS) and bioinformatics tools. The genome size of Vallisneria spinulosa is approximately 3,595 Mbp, in which nearly 60% of the genome consists of repetitive sequences. The majority of the repetitive sequences are LTR-retrotransposons comprising 43% of the genome. Although the amount of sequencing data used in this study was not sufficient for a whole-genome assembly, it could generate an overview of representative elements in the genome. These results will lay a new foundation for further studies on various species that belong to the Vallisneria genus.

KeywordGenome size C value Repetitive sequences Vallisneria spinulosa RepeatExplorer
DOI10.7717/peerj.3982
Funding Organizationproject Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake''
Indexed BySCI
Language英语
Funding Projectproject Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake''[YCCG1507-81]
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000414035600002
WOS KeywordTRANSPOSABLE ELEMENT ; CHROMOSOMES ; DNA ; HYDROCHARITACEAE ; EVOLUTION
PublisherPEERJ INC
Funding Organizationproject Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake'' ; project Technical support for the maintenance and monitoring of the key aquatic communities in Yanlong Lake''
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/30838
Collection其他_期刊论文
Corresponding AuthorWang, Qishuo
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Wuhan, Hubei, Peoples R China
2.Jiangsu Tianshen Co Ltd, Huaian, Jiangsu, Peoples R China
3.Hongze Lake Fisheries Adm, Comm Off Jiangsu Prov, Huaian, Jiangsu, Peoples R China
4.Hubei Polytech Univ, Sch Environm Sci & Engn, Huangshi, Hubei, Peoples R China
5.Management Off Yanlong Lake, Yancheng, Jiangsu, Peoples R China
Recommended Citation
GB/T 7714
Feng, RuiJuan,Wang, Xin,Tao, Min,et al. Genome size and identification of abundant repetitive sequences in Vallisneria spinulosa[J]. PEERJ,2017,5(1):14.
APA Feng, RuiJuan,Wang, Xin,Tao, Min,Du, Guanchao,&Wang, Qishuo.(2017).Genome size and identification of abundant repetitive sequences in Vallisneria spinulosa.PEERJ,5(1),14.
MLA Feng, RuiJuan,et al."Genome size and identification of abundant repetitive sequences in Vallisneria spinulosa".PEERJ 5.1(2017):14.
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