IHB OpenIR  > 水生生物多样性与资源保护研究中心  > 期刊论文
Genome Sequence of the Freshwater Yangtze Finless Porpoise
Yuan, Yuan1,2; Zhang, Peijun3; Wang, Kun1,2; Liu, Mingzhong3; Li, Jing1; Zheng, Jinsong4; Wang, Ding4; Xu, Wenjie1; Lin, Mingli3; Dong, Lijun3; Zhu, Chenglong1; Qiu, Qiang1,2; Li, Songhai3
Corresponding AuthorQiu, Qiang(qiuqiang@lzu.edu.cn) ; Li, Songhai(lish@idsse.ac.cn)
2018-04-01
Source PublicationGENES
ISSN2073-4425
Volume9Issue:4Pages:9
AbstractThe Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina HiSeq 2000 platform. After filtering the low-quality and duplicated reads, we assembled a draft genome of 2.22 Gb, with contig N50 and scaffold N50 values of 46.69 kilobases (kb) and 1.71 megabases (Mb), respectively. We identified 887.63 Mb of repetitive sequences and predicted 18,479 protein-coding genes in the assembled genome. The phylogenetic tree showed a relationship between the Yangtze finless porpoise and the Yangtze River dolphin, which diverged approximately 20.84 million years ago. In comparisons with the genomes of 10 other mammals, we detected 44 species-specific gene families, 164 expanded gene families, and 313 positively selected genes in the Yangtze finless porpoise genome. The assembled genome sequence and underlying sequence data are available at the National Center for Biotechnology Information under BioProject accession number PRJNA433603.
KeywordYangtze finless porpoise endangered species genome genome assembly annotation genome evolution
DOI10.3390/genes9040213
Funding OrganizationTalents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences
Indexed BySCI ; SCI
Language英语
Funding ProjectTalents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China[41422604] ; Chinese Academy of Sciences[SIDSSE-BR-315 201201] ; Chinese Academy of Sciences[Y410012]
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000435182200041
WOS KeywordSECONDARY AQUATIC ADAPTATION ; PHYLOGENETIC ANALYSIS ; ADAPTIVE EVOLUTION ; TOOL ; NEOPHOCAENA ; ALIGNMENTS ; EXTINCTION ; CETACEANS ; PROGRAM
PublisherMDPI
Funding OrganizationTalents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences
Citation statistics
Cited Times:4[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/30616
Collection水生生物多样性与资源保护研究中心_期刊论文
Corresponding AuthorQiu, Qiang; Li, Songhai
Affiliation1.Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China
2.Northwestern Polytech Univ, Qingdao Res Inst, Qingdao 266200, Peoples R China
3.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Marine Mammal & Marine Bioacoust Lab, Sanya 572000, Peoples R China
4.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Hubei, Peoples R China
Recommended Citation
GB/T 7714
Yuan, Yuan,Zhang, Peijun,Wang, Kun,et al. Genome Sequence of the Freshwater Yangtze Finless Porpoise[J]. GENES,2018,9(4):9.
APA Yuan, Yuan.,Zhang, Peijun.,Wang, Kun.,Liu, Mingzhong.,Li, Jing.,...&Li, Songhai.(2018).Genome Sequence of the Freshwater Yangtze Finless Porpoise.GENES,9(4),9.
MLA Yuan, Yuan,et al."Genome Sequence of the Freshwater Yangtze Finless Porpoise".GENES 9.4(2018):9.
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