IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly
Warren, Wesley C.1; Garcia-Perez, Raquel2; Xu, Sen3; Lampert, Kathrin P.4; Chalopin, Domitille5; Stoeck, Matthias6; Loewe, Laurence7,17; Lu, Yuan8; Kuderna, Lukas2; Minx, Patrick1; Montague, Michael J.9; Tomlinson, Chad1; Hillier, LaDeana W.1; Murphy, Daniel N.10; Wang, John11; Wang, Zhongwei12,13; Macias Garcia, Constantino14; Thomas, Gregg C. W.15; Volff, Jean-Nicolas; Farias, Fabiana1; Aken, Bronwen10; Walter, Ronald B.8; Pruitt, Kim D.16; Marques-Bonet, Tomas2,17,18; Hahn, Matthew W.15; Kneitz, Susanne12; Lynch, Michael; Schartl, Manfred12,19,20,21
2018-04-01
Source PublicationNATURE ECOLOGY & EVOLUTION
ISSN2397-334X
Volume2Issue:4Pages:669-679
Abstract

The extreme rarity of asexual vertebrates in nature is generally explained by genomic decay due to absence of meiotic recombination, thus leading to extinction of such lineages. We explore features of a vertebrate asexual genome, the Amazon molly, Poecilia formosa, and find few signs of genetic degeneration but unique genetic variability and ongoing evolution. We uncovered a substantial clonal polymorphism and, as a conserved feature from its interspecific hybrid origin, a 10-fold higher heterozygosity than in the sexual parental species. These characteristics seem to be a principal reason for the unpredicted fitness of this asexual vertebrate. Our data suggest that asexual vertebrate lineages are scarce not because they are at a disadvantage, but because the genomic combinations required to bypass meiosis and to make up a functioning hybrid genome are rarely met in nature.

DOI10.1038/s41559-018-0473-y
Funding OrganizationNIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; 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Indexed BySCI
Language英语
Funding ProjectNIH[2R24OD011198-04A1] ; NIH[R24OD011120] ; NSF[DBI-1564611] ; German Research Foundation DFG[Scha408/10-1] ; German Research Foundation DFG[Scha408/12-1] ; German Science Foundation/DFG[STO 493/2-2] ; MINECO (FEDER)[BFU2014-55090-P] ; Obra Social 'La Caixa' ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Wellcome Trust[WT108749/Z/15/Z] ; Wellcome Trust[WT098051] ; National Institutes of Health[R24 RR032658-01] ; European Molecular Biology Laboratory ; Howard Hughes International Early Career ; [U01 MH106874]
WOS Research AreaEnvironmental Sciences & Ecology ; Evolutionary Biology
WOS SubjectEcology ; Evolutionary Biology
WOS IDWOS:000431612000021
WOS KeywordFISH POECILIA-FORMOSA ; MAJOR HISTOCOMPATIBILITY COMPLEX ; GYNOGENETIC FISH ; TRANSPOSABLE ELEMENTS ; XIPHOPHORUS-MACULATUS ; EVOLUTIONARY ORIGIN ; ASEXUAL MOLLIES ; X. COUCHIANUS ; DAPHNIA-PULEX ; SEX
PublisherNATURE PUBLISHING GROUP
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Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; 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Howard Hughes International Early Career ; Howard Hughes International Early Career ; Howard Hughes International Early Career ; Howard Hughes International Early Career ; Howard Hughes International Early Career ; Howard Hughes International Early Career ; Howard Hughes International Early Career ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; 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Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; 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Howard Hughes International Early Career ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NIH ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; NSF ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Research Foundation DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; German Science Foundation/DFG ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; MINECO (FEDER) ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Obra Social 'La Caixa' ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; 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Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; 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Cited Times:15[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/30598
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorWarren, Wesley C.; Schartl, Manfred
Affiliation1.Washington Univ, Sch Med, McDonnell Genome Inst, St Louis, MO USA
2.PRBB, Inst Evolutionary Biol UPF CSIC, Barcelona, Spain
3.Univ Texas Arlington, Dept Biol, Arlington, TX 76019 USA
4.Ruhr Univ Bochum, Dept Anim Ecol Evolut & Biodivers, Bochum, Germany
5.Univ Lyon, CNRS, Inst Genom Fonct Lyon, Ecole Normale Super Lyon, Lyon, France
6.Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany
7.Univ Wisconsin, Lab Genet & Wisconsin Inst Discovery, Madison, WI USA
8.Texas State Univ, Dept Chem & Biochem, San Marcos, TX USA
9.Univ Penn, Perelman Sch Med, Dept Neurosci, Philadelphia, PA USA
10.European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Hinxton, Cambridgeshire, Belgium
11.Acad Sinica, Biodivers Res Ctr, Taipei, Taiwan
12.Univ Wurzburg, Bioctr, Dept Physiol Chem, Wurzburg, Germany
13.Chinese Acad Sci, Inst Hydrobiol, Beijing, Peoples R China
14.Univ Nacl Autonoma Mexico, Inst Ecol, Ciudad Univ, Mexico City, DF, Mexico
15.Indiana Univ, Dept Biol, Bloomington, IN USA
16.NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD USA
17.Barcelona Inst Sci & Technol, CGR, Barcelona, Spain
18.Catalan Inst Res & Adv Studies ICREA, Barcelona, Spain
19.Texas A&M Univ, Hagler Inst Adv Study, College Stn, TX USA
20.Texas A&M Univ, Dept Biol, College Stn, TX 77843 USA
21.Univ Hosp Wurzburg, Comprehens Canc Ctr Mainfranken, Wurzburg, Germany
Recommended Citation
GB/T 7714
Warren, Wesley C.,Garcia-Perez, Raquel,Xu, Sen,et al. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly[J]. NATURE ECOLOGY & EVOLUTION,2018,2(4):669-679.
APA Warren, Wesley C..,Garcia-Perez, Raquel.,Xu, Sen.,Lampert, Kathrin P..,Chalopin, Domitille.,...&Schartl, Manfred.(2018).Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.NATURE ECOLOGY & EVOLUTION,2(4),669-679.
MLA Warren, Wesley C.,et al."Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly".NATURE ECOLOGY & EVOLUTION 2.4(2018):669-679.
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