Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly | |
Warren, Wesley C.1; Garcia-Perez, Raquel2; Xu, Sen3; Lampert, Kathrin P.4; Chalopin, Domitille5; Stoeck, Matthias6; Loewe, Laurence7,17; Lu, Yuan8; Kuderna, Lukas2; Minx, Patrick1; Montague, Michael J.9; Tomlinson, Chad1; Hillier, LaDeana W.1; Murphy, Daniel N.10; Wang, John11; Wang, Zhongwei12,13; Macias Garcia, Constantino14; Thomas, Gregg C. W.15; Volff, Jean-Nicolas; Farias, Fabiana1; Aken, Bronwen10; Walter, Ronald B.8; Pruitt, Kim D.16; Marques-Bonet, Tomas2,17,18; Hahn, Matthew W.15; Kneitz, Susanne12; Lynch, Michael; Schartl, Manfred12,19,20,21 | |
2018-04-01 | |
Source Publication | NATURE ECOLOGY & EVOLUTION
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ISSN | 2397-334X |
Volume | 2Issue:4Pages:669-679 |
Abstract | The extreme rarity of asexual vertebrates in nature is generally explained by genomic decay due to absence of meiotic recombination, thus leading to extinction of such lineages. We explore features of a vertebrate asexual genome, the Amazon molly, Poecilia formosa, and find few signs of genetic degeneration but unique genetic variability and ongoing evolution. We uncovered a substantial clonal polymorphism and, as a conserved feature from its interspecific hybrid origin, a 10-fold higher heterozygosity than in the sexual parental species. These characteristics seem to be a principal reason for the unpredicted fitness of this asexual vertebrate. Our data suggest that asexual vertebrate lineages are scarce not because they are at a disadvantage, but because the genomic combinations required to bypass meiosis and to make up a functioning hybrid genome are rarely met in nature. |
DOI | 10.1038/s41559-018-0473-y |
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Indexed By | SCI |
Language | 英语 |
Funding Project | NIH[2R24OD011198-04A1] ; NIH[R24OD011120] ; NSF[DBI-1564611] ; German Research Foundation DFG[Scha408/10-1] ; German Research Foundation DFG[Scha408/12-1] ; German Science Foundation/DFG[STO 493/2-2] ; MINECO (FEDER)[BFU2014-55090-P] ; Obra Social 'La Caixa' ; Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Wellcome Trust[WT108749/Z/15/Z] ; Wellcome Trust[WT098051] ; National Institutes of Health[R24 RR032658-01] ; European Molecular Biology Laboratory ; Howard Hughes International Early Career ; [U01 MH106874] |
WOS Research Area | Environmental Sciences & Ecology ; Evolutionary Biology |
WOS Subject | Ecology ; Evolutionary Biology |
WOS ID | WOS:000431612000021 |
WOS Keyword | FISH POECILIA-FORMOSA ; MAJOR HISTOCOMPATIBILITY COMPLEX ; GYNOGENETIC FISH ; TRANSPOSABLE ELEMENTS ; XIPHOPHORUS-MACULATUS ; EVOLUTIONARY ORIGIN ; ASEXUAL MOLLIES ; X. COUCHIANUS ; DAPHNIA-PULEX ; SEX |
Publisher | NATURE PUBLISHING GROUP |
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Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Intramural Research Program of the NIH, National Library of Medicine ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; Wellcome Trust ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; National Institutes of Health ; 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Citation statistics | |
Document Type | 期刊论文 |
Identifier | http://ir.ihb.ac.cn/handle/342005/30598 |
Collection | 鱼类生物学及渔业生物技术研究中心_期刊论文 |
Corresponding Author | Warren, Wesley C.; Schartl, Manfred |
Affiliation | 1.Washington Univ, Sch Med, McDonnell Genome Inst, St Louis, MO USA 2.PRBB, Inst Evolutionary Biol UPF CSIC, Barcelona, Spain 3.Univ Texas Arlington, Dept Biol, Arlington, TX 76019 USA 4.Ruhr Univ Bochum, Dept Anim Ecol Evolut & Biodivers, Bochum, Germany 5.Univ Lyon, CNRS, Inst Genom Fonct Lyon, Ecole Normale Super Lyon, Lyon, France 6.Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany 7.Univ Wisconsin, Lab Genet & Wisconsin Inst Discovery, Madison, WI USA 8.Texas State Univ, Dept Chem & Biochem, San Marcos, TX USA 9.Univ Penn, Perelman Sch Med, Dept Neurosci, Philadelphia, PA USA 10.European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Hinxton, Cambridgeshire, Belgium 11.Acad Sinica, Biodivers Res Ctr, Taipei, Taiwan 12.Univ Wurzburg, Bioctr, Dept Physiol Chem, Wurzburg, Germany 13.Chinese Acad Sci, Inst Hydrobiol, Beijing, Peoples R China 14.Univ Nacl Autonoma Mexico, Inst Ecol, Ciudad Univ, Mexico City, DF, Mexico 15.Indiana Univ, Dept Biol, Bloomington, IN USA 16.NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD USA 17.Barcelona Inst Sci & Technol, CGR, Barcelona, Spain 18.Catalan Inst Res & Adv Studies ICREA, Barcelona, Spain 19.Texas A&M Univ, Hagler Inst Adv Study, College Stn, TX USA 20.Texas A&M Univ, Dept Biol, College Stn, TX 77843 USA 21.Univ Hosp Wurzburg, Comprehens Canc Ctr Mainfranken, Wurzburg, Germany |
Recommended Citation GB/T 7714 | Warren, Wesley C.,Garcia-Perez, Raquel,Xu, Sen,et al. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly[J]. NATURE ECOLOGY & EVOLUTION,2018,2(4):669-679. |
APA | Warren, Wesley C..,Garcia-Perez, Raquel.,Xu, Sen.,Lampert, Kathrin P..,Chalopin, Domitille.,...&Schartl, Manfred.(2018).Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.NATURE ECOLOGY & EVOLUTION,2(4),669-679. |
MLA | Warren, Wesley C.,et al."Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly".NATURE ECOLOGY & EVOLUTION 2.4(2018):669-679. |
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