Genome-wide identification of 99 autophagy-related (Atg) genes in the monogonont rotifer Brachionus spp. and transcriptional modulation in response to cadmium | |
Kang, Hye-Min1; Lee, Jin-Sol1; Kim, Min-Sub1; Lee, Young Hwan1; Jung, Jee-Hyun2; Hagiwara, Atsushi3,4; Zhou, Bingsheng5; Lee, Jae-Seong1; Jeong, Chang-Bum1 | |
2018-08-01 | |
Source Publication | AQUATIC TOXICOLOGY
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ISSN | 0166-445X |
Volume | 201Issue:1Pages:73-82 |
Abstract | Autophagy originated from the common ancestor of all life forms, and its function is highly conserved from yeast to humans. Autophagy plays a key role in various fundamental biological processes including defense, and has developed through serial interactions of multiple gene sets referred to as autophagy-related (Atg) genes. Despite their significance in metazoan life and evolution, few studies have been conducted to identify these genes in aquatic invertebrates. In this study, we identified whole Atg genes in four Brachionus rotifer spp., namely B. calycifiorus, B. koreanus, B. plicatilis, and B. rotundiformis, through searches of their entire genomes; and we annotated them according to the yeast nomenclature. Twenty-four genes orthologous to yeast genes were present in all of the Brachionus spp. while three additional gene duplicates were identified in the genome of B. koreanus, indicating that these genes had diversified during the speciation. Also, their transcriptional responses to cadmium exposure indicated regulation by cadmium-induced oxidative-stress related signaling pathways. This study provides valuable information on 99 conserved Atg genes involved in autophagosome formation in Brachionus spp., with transcriptional modulation in response to cadmium, in the context of the role of autophagy in the damage response. |
Keyword | Autophagy Autophagy-related genes Atg Rotifer Brachionus spp. |
DOI | 10.1016/j.aquatox.2018.05.021 |
Funding Organization | National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique |
Indexed By | SCI |
Language | 英语 |
Funding Project | National Research Foundation[2017R1D1A1B03032814] ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique[PE99624] |
WOS Research Area | Marine & Freshwater Biology ; Toxicology |
WOS Subject | Marine & Freshwater Biology ; Toxicology |
WOS ID | WOS:000440530000009 |
WOS Keyword | CELL-DEATH ; SACCHAROMYCES-CEREVISIAE ; MEDIATED AUTOPHAGY ; OXIDATIVE STRESS ; MODEL SELECTION ; COMPLEX ; PROTEIN ; EXPRESSION ; KOREANUS ; PATHWAY |
Publisher | ELSEVIER SCIENCE BV |
Funding Organization | National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; National Research Foundation ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique ; grant of Development of risk assessment for control technology to reduce transfer of ship's biofouling: In-water cleaning technique |
Citation statistics | |
Document Type | 期刊论文 |
Identifier | http://ir.ihb.ac.cn/handle/342005/30553 |
Collection | 水环境工程研究中心_期刊论文 |
Corresponding Author | Lee, Jae-Seong; Jeong, Chang-Bum |
Affiliation | 1.Sungkyunkwan Univ, Coll Sci, Dept Biol Sci, Suwon 16419, South Korea 2.Korea Inst Ocean Sci & Technol, Oil & POPs Res Grp, Geoje 53201, South Korea 3.Nagasaki Univ, Grad Sch Fisheries & Environm Sci, Nagasaki 8528521, Japan 4.Nagasaki Univ, Org Marine Sci & Technol, Nagasaki 8528521, Japan 5.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China |
Recommended Citation GB/T 7714 | Kang, Hye-Min,Lee, Jin-Sol,Kim, Min-Sub,et al. Genome-wide identification of 99 autophagy-related (Atg) genes in the monogonont rotifer Brachionus spp. and transcriptional modulation in response to cadmium[J]. AQUATIC TOXICOLOGY,2018,201(1):73-82. |
APA | Kang, Hye-Min.,Lee, Jin-Sol.,Kim, Min-Sub.,Lee, Young Hwan.,Jung, Jee-Hyun.,...&Jeong, Chang-Bum.(2018).Genome-wide identification of 99 autophagy-related (Atg) genes in the monogonont rotifer Brachionus spp. and transcriptional modulation in response to cadmium.AQUATIC TOXICOLOGY,201(1),73-82. |
MLA | Kang, Hye-Min,et al."Genome-wide identification of 99 autophagy-related (Atg) genes in the monogonont rotifer Brachionus spp. and transcriptional modulation in response to cadmium".AQUATIC TOXICOLOGY 201.1(2018):73-82. |
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