IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Screening and characterisation of sex differentiation-related long non-coding RNAs in Chinese soft-shell turtle (Pelodiscus sinensis)
Zhang, Jun1; Yu, Peng1,2,3; Zhou, Qinyan1; Li, Xilei1; Ding, Shuquan1; Su, Shiping1; Zhang, Xiaohua1; Yang, Xiaoli1; Zhou, Weishang1; Wan, Quan1; Gui, Jian-Fang2,3
2018-06-05
Source PublicationSCIENTIFIC REPORTS
ISSN2045-2322
Volume8Issue:1Pages:10
Abstract

Long non-coding RNAs (IncRNAs) perform distinct functions in various biological processes in mammals, including sex differentiation. However, the roles of IncRNAs in other vertebrates, especially in the Chinese soft-shell turtle (Pelodiscus sinensis), remain to be clarified. In this study, we performed genome-wide analysis of the IncRNA expression profiles in gonad tissues and screened numerous sex-specific IncRNAs in the Chinese soft-shell turtle. Of the 363,310,650 clean reads obtained, 5,994 sequences were typed as IncRNAs, of which 4,463 were novel. A selection of sex-specific IncRNAs (female 932, male 449) from femal ovaries and male testis were shown to act on target genes in cis and in trans, and most were involved in gonad differentiation based on Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. Furthermore, interactions among the differentially expressed IncRNA-mRNAs and protein coding genes were identified by construction of correlation networks. Overall, our systematic analysis of IncRNA expression profiles in gonad tissues revealed numerous sex-specific IncRNAs in P. sinensis. Thereby, these findings provide new insights into the function of IncRNAs in sex differentiation and highlight a group of candidate IncRNAs for future studies.

DOI10.1038/s41598-018-26841-3
Funding OrganizationAnhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; 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State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; 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State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; 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State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province
Indexed BySCI
Language英语
Funding ProjectAnhui Provincial Higher Education Natural Science Foundation[KJ2016A241] ; State Key Laboratory of Freshwater Ecology and Biotechnology[2016FB16] ; Anhui Agricultural University[2015ZD05] ; Anhui Agricultural University[yj2016-12] ; Natural Science Foundation of Anhui Province[1508085MC54]
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000434122600055
WOS KeywordGENE-EXPRESSION ; TRANSCRIPTION ; DMRT1 ; ZEBRAFISH ; REVEALS ; CHICKEN ; MEDAKA ; LNCRNA ; CARP ; TRIONYCHIDAE
PublisherNATURE PUBLISHING GROUP
Funding OrganizationAnhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; 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State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; 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Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; Anhui Provincial Higher Education Natural Science Foundation ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Anhui Agricultural University ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province ; Natural Science Foundation of Anhui Province
Citation statistics
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/30450
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorWan, Quan; Gui, Jian-Fang
Affiliation1.Anhui Agr Univ, Coll Anim Sci & Technol, Hefei 230036, Anhui, Peoples R China
2.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
Recommended Citation
GB/T 7714
Zhang, Jun,Yu, Peng,Zhou, Qinyan,et al. Screening and characterisation of sex differentiation-related long non-coding RNAs in Chinese soft-shell turtle (Pelodiscus sinensis)[J]. SCIENTIFIC REPORTS,2018,8(1):10.
APA Zhang, Jun.,Yu, Peng.,Zhou, Qinyan.,Li, Xilei.,Ding, Shuquan.,...&Gui, Jian-Fang.(2018).Screening and characterisation of sex differentiation-related long non-coding RNAs in Chinese soft-shell turtle (Pelodiscus sinensis).SCIENTIFIC REPORTS,8(1),10.
MLA Zhang, Jun,et al."Screening and characterisation of sex differentiation-related long non-coding RNAs in Chinese soft-shell turtle (Pelodiscus sinensis)".SCIENTIFIC REPORTS 8.1(2018):10.
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