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Developing a DNA barcode library for perciform fishes in the South China Sea: Species identification, accuracy and cryptic diversity
Hou, Gang1,2,3; Chen, Wei-Tao1,2; Lu, Huo-Sheng3; Cheng, Fei1; Xie, Song-Guang1,4
2018
Source PublicationMOLECULAR ECOLOGY RESOURCES
ISSN1755-098X
Volume18Issue:1Pages:137-146
Abstract

DNA barcodes were studied for 1,353 specimens representing 272 morphological species belonging to 149 genera and 55 families of Perciformes from the South China Sea (SCS). The average Kimura 2-parameter (K2P) distances within species, genera and families were 0.31%, 8.71% and 14.52%, respectively. A neighbour-joining (NJ) tree, Bayesian inference (BI) and maximum-likelihood (ML) trees and Automatic Barcode Gap Discovery (ABGD) revealed 260, 253 and 259 single-species-representing clusters, respectively. Barcoding gap analysis (BGA) demonstrated that barcode gaps were present for 178 of 187 species analysed with multiple specimens (95.2%), with the minimum interspecific distance to the nearest neighbour larger than the maximum intraspecific distance. A group of three Thunnus species (T. albacares, T. obesus and T. tonggol), a pair of Gerres species (G. oyena and G. japonicus), a pair of Istiblennius species (I. edentulous and I. lineatus) and a pair of Uranoscopus species (U. oligolepis and U. kaianus) were observed with low interspecific distances and overlaps between intra- and interspecific genetic distances. Three species (Apogon ellioti, Naucrates ductor and Psenopsis anomala) showed deep intraspecific divergences and generated two lineages each, suggesting the possibility of cryptic species. Our results demonstrated that DNA barcodes are highly reliable for delineating species of Perciformes in the SCS. The DNA barcode library established in this study will shed light on further research on the diversity of Perciformes in the SCS.

Keywordcryptic species DNA barcode gap overlap genetic divergence Perciformes South China Sea
DOI10.1111/1755-0998.12718
Funding OrganizationNatural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Guangdong Provincial College Students' Innovative Project ; 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Indexed BySCI
Language英语
Funding ProjectNatural Science Foundation of China, NSFC[31702347] ; Ministry of Agriculture of People's Republic of China[A14365] ; Ministry of Agriculture of People's Republic of China[A16364] ; Natural Science Foundation of Guangdong Ocean University ; Guangdong Provincial College Students' Innovative Project[524000087074]
WOS Research AreaBiochemistry & Molecular Biology ; Environmental Sciences & Ecology ; Evolutionary Biology
WOS SubjectBiochemistry & Molecular Biology ; Ecology ; Evolutionary Biology
WOS IDWOS:000424112000013
WOS KeywordFRESH-WATER FISHES ; MARINE FISHES ; MIXED MODELS ; TAXONOMY ; DELIMITATION ; SEQUENCES ; CANADA ; STATE ; RIVER
PublisherWILEY
Funding OrganizationNatural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Natural Science Foundation of China, NSFC ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Ministry of Agriculture of People's Republic of China ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; 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Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Natural Science Foundation of Guangdong Ocean University ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project ; Guangdong Provincial College Students' Innovative Project
Citation statistics
Cited Times:3[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/29973
Collection淡水生态学研究中心_期刊论文
Corresponding AuthorXie, Song-Guang
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Hubei, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Guangdong Ocean Univ, Zhanjiang, Peoples R China
4.Chinese Acad Sci, Inst Hydrobiol, Huaian Res Ctr, Huaian, Peoples R China
Recommended Citation
GB/T 7714
Hou, Gang,Chen, Wei-Tao,Lu, Huo-Sheng,et al. Developing a DNA barcode library for perciform fishes in the South China Sea: Species identification, accuracy and cryptic diversity[J]. MOLECULAR ECOLOGY RESOURCES,2018,18(1):137-146.
APA Hou, Gang,Chen, Wei-Tao,Lu, Huo-Sheng,Cheng, Fei,&Xie, Song-Guang.(2018).Developing a DNA barcode library for perciform fishes in the South China Sea: Species identification, accuracy and cryptic diversity.MOLECULAR ECOLOGY RESOURCES,18(1),137-146.
MLA Hou, Gang,et al."Developing a DNA barcode library for perciform fishes in the South China Sea: Species identification, accuracy and cryptic diversity".MOLECULAR ECOLOGY RESOURCES 18.1(2018):137-146.
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