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Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii
Zhang, Zhiyong1; Zhang, Kai2,3,4; Chen, Shuyin1; Zhang, Zhiwei1; Zhang, Jinyong5; You, Xinxin3; Bian, Chao3,6; Xu, Jin1; Jia, Chaofeng1; Qiang, Jun2; Zhu, Fei1; Li, Hongxia2; Liu, Hailin1; Shen, Dehua1; Ren, Zhonghong1; Chen, Jieming3; Li, Jia; Gao, Tianheng7; Gu, Ruobo3,6; Xu, Junmin3,6; Shi, Qiong3,4,6; Xu, Pao2
Corresponding AuthorShi, Qiong(shiqiong@genomics.cn) ; Xu, Pao(xup@ffrc.cn)
2018-02-26
Source PublicationGIGASCIENCE
ISSN2047-217X
Volume7Issue:4Pages:7
AbstractBackground: As one of the most popular and valuable commercial marine fishes in China and East Asian countries, the Chinese black porgy (Acanthopagrus schlegelii), also known as the blackhead seabream, has some attractive characteristics such as fast growth rate, good meat quality, resistance to diseases, and excellent adaptability to various environments. Furthermore, the black porgy is a good model for investigating sex changes in fish due to its protandrous hermaphroditism. Here, we obtained a high-quality genome assembly of this interesting teleost species and performed a genomic survey on potential genes associated with the sex-change phenomenon. Findings: We generated 175.4 gigabases (Gb) of clean sequence reads using a whole-genome shotgun sequencing strategy. The final genome assembly is approximately 688.1 megabases (Mb), accounting for 93% of the estimated genome size (739.6 Mb). The achieved scaffold N50 is 7.6 Mb, reaching a relatively high level among sequenced fish species. We identified 19 465 protein-coding genes, which had an average transcript length of 17.3 kb. By performing a comparative genomic analysis, we found 3 types of genes potentially associated with sex change, which are useful for studying the genetic basis of the protandrous hermaphroditism. Conclusions: We provide a draft genome assembly of the Chinese black porgy and discuss the potential genetic mechanisms of sex change. These data are also an important resource for studying the biology and for facilitating breeding of this economically important fish.
KeywordChinese black porgy Acanthopagrus schlegelii whole genome sequencing genome assembly sex change-related genes
DOI10.1093/gigascience/giy012
Funding OrganizationAquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship
Indexed BySCI ; SCI
Language英语
Funding ProjectAquatic Sanxin Engineering Major Project of Jiangsu Province[D2015-17] ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province[BE2016326] ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province[CX(17)2021] ; Aquatic Sanxin Engineering Project of Jiangsu Province[Y2016-23] ; Jiangsu Innovation Ability Construction Program[BM2015017] ; Nantong Applied Basic Research Program[MS12015071] ; Nantong Applied Basic Research Program[MS12015070] ; Nantong Applied Basic Research Program[MS12016029] ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000430065600001
WOS KeywordPROVIDES INSIGHTS ; SEX DETERMINATION ; GONADAL DEVELOPMENT ; EXPRESSION PATTERN ; CYPRINUS-CARPIO ; ZEBRAFISH VASA ; COMMON CARP ; RNA-SEQ ; SEQUENCE ; DMRT1
PublisherOXFORD UNIV PRESS
Funding OrganizationAquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Aquatic Sanxin Engineering Major Project of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Key Research and Development (Modern Agriculture) Program of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Fund for Independent Innovation of Agricultural Science and Technology of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Aquatic Sanxin Engineering Project of Jiangsu Province ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Jiangsu Innovation Ability Construction Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Nantong Applied Basic Research Program ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship
Citation statistics
Cited Times:4[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/29648
Collection其他_期刊论文
Corresponding AuthorShi, Qiong; Xu, Pao
Affiliation1.Jiangsu Marine Fishery Res Inst, Nantong 226007, Jiangsu, Peoples R China
2.Chinese Acad Fishery Sci, Freshwater Fishery Res Ctr, Wuxi 214081, Jiangsu, Peoples R China
3.BGI Acad Marine Sci, BGI Marine, BGI, Shenzhen Key Lab Marine Genom,Guangdong Prov Key, Shenzhen 518083, Peoples R China
4.Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Guangdong, Peoples R China
5.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430000, Hubei, Peoples R China
6.BGI Zhenjiang Inst Hydrobiol, Zhenjiang 212000, Jiangsu, Peoples R China
7.Hohhai Univ, Coll Oceanog, Nanjing 210098, Jiangsu, Peoples R China
Recommended Citation
GB/T 7714
Zhang, Zhiyong,Zhang, Kai,Chen, Shuyin,et al. Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii[J]. GIGASCIENCE,2018,7(4):7.
APA Zhang, Zhiyong.,Zhang, Kai.,Chen, Shuyin.,Zhang, Zhiwei.,Zhang, Jinyong.,...&Xu, Pao.(2018).Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii.GIGASCIENCE,7(4),7.
MLA Zhang, Zhiyong,et al."Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii".GIGASCIENCE 7.4(2018):7.
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