IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade
Zou, Hong1,2; Jakovlic, Ivan3; Zhang, Dong1,2,4; Chen, Rong3; Mahboob, Shahid5,6; Al-Ghanim, Khalid Abdullah5; Al-Misned, Fahad5; Li, Wen-Xiang1,2; Wang, Gui-Tang1,2
Corresponding AuthorWang, Gui-Tang(gtwang@ihb.ac.cn)
2018-09-04
Source PublicationPLOS ONE
ISSN1932-6203
Volume13Issue:9Pages:16
AbstractAs a result of great diversity in life histories and a large number of described species, taxonomic and phylogenetic uncertainty permeates the entire crustacean order of Isopoda. Large molecular datasets capable of providing sufficiently high phylogenetic resolution, such as mitochondrial genomes (mitogenomes), are needed to infer their evolutionary history with confidence, but isopod mitogenomes remain remarkably poorly represented in public databases. We sequenced the complete mitogenome of Cymothoa indica, a species belonging to a family from which no mitochondrial genome was sequenced yet, Cymothoidae. The mitogenome (circular, 14484 bp, A+T = 63.8%) is highly compact, appears to be missing two tRNA genes (trnI and trnE), and exhibits a unique gene order with a large number of rearrangements. High compactness and the existence of palindromes indicate that the mechanism behind these rearrangements might be associated with linearization events in its evolutionary history, similar to those proposed for isopods from the Armadillidium genus (Oniscidea). Isopods might present an important model system to study the proposed discontinuity in the dynamics of mitochondrial genomic architecture evolution. Phylogenetic analyses (Bayesian Inference and Maximum Likelihood) conducted using nucleotide sequences of all mitochondrial genes resolved Oniscidea and Cymothoida suborders as paraphyletic. Cymothoa indica was resolved as a sister group (basal) to all remaining isopods, which challenges the accepted isopod phylogeny, where Cymothoida are the most derived, and Phreatoicidea the most basal isopod group. There is growing evidence that Cymothoida suborder might be split into two evolutionary distant clades, with parasitic species being the most basal split in the Isopoda clade, but a much larger amount of molecular resources carrying a high phylogenetic resolution will be needed to infer the remarkably complex evolutionary history of this group of animals with confidence.
DOI10.1371/journal.pone.0203089
Funding OrganizationEarmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University
Indexed BySCI ; SCI
Language英语
Funding ProjectEarmarked Fund for China Agriculture Research System[CARS-45-15] ; National Natural Science Foundation of China[31572658] ; Major Scientific and Technological Innovation Project of Hubei Province[2015ABA045] ; Deanship of Scientific Research at King Saud University[1435-012]
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000444222400027
WOS KeywordTRANSFER-RNA GENES ; TERRESTRIAL ISOPODS ; CRUSTACEA ISOPODA ; DEEP-SEA ; ARMADILLIDIUM-VULGARE ; PHYLOGENETIC ANALYSIS ; NUCLEOTIDE-SEQUENCES ; INVERTED REPEATS ; EVOLUTION ; PERACARIDA
PublisherPUBLIC LIBRARY SCIENCE
Funding OrganizationEarmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University
Citation statistics
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/29371
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorWang, Gui-Tang
Affiliation1.Chinese Acad Sci, Key Lab Aquaculture Dis Control, Minist Agr, Inst Hydrobiol, Wuhan, Hubei, Peoples R China
2.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan, Hubei, Peoples R China
3.Biotransduct Lab, Wuhan, Hubei, Peoples R China
4.Univ Chinese Acad Sci, Beijing, Peoples R China
5.King Saud Univ, Dept Zool, Coll Sci, Riyadh, Saudi Arabia
6.GC Univ, Dept Zool, Faisalabad, Pakistan
Recommended Citation
GB/T 7714
Zou, Hong,Jakovlic, Ivan,Zhang, Dong,et al. The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade[J]. PLOS ONE,2018,13(9):16.
APA Zou, Hong.,Jakovlic, Ivan.,Zhang, Dong.,Chen, Rong.,Mahboob, Shahid.,...&Wang, Gui-Tang.(2018).The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade.PLOS ONE,13(9),16.
MLA Zou, Hong,et al."The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade".PLOS ONE 13.9(2018):16.
Files in This Item:
There are no files associated with this item.
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Zou, Hong]'s Articles
[Jakovlic, Ivan]'s Articles
[Zhang, Dong]'s Articles
Baidu academic
Similar articles in Baidu academic
[Zou, Hong]'s Articles
[Jakovlic, Ivan]'s Articles
[Zhang, Dong]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Zou, Hong]'s Articles
[Jakovlic, Ivan]'s Articles
[Zhang, Dong]'s Articles
Terms of Use
No data!
Social Bookmark/Share
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.