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题名: Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates
作者: Fu, Beide1; Wang, Xinhua1, 2; Feng, Xiu1, 2; Yu, Xiaomu1; Tong, Jingou1
关键词: Bighead carp ; Growth rate ; Comparative transcriptomics ; RT-PCR
刊名: COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
发表日期: 2016-12-01
DOI: 10.1016/j.cbd.2016.08.006
卷: 20, 页:111-117
收录类别: SCI
文章类型: Article
WOS标题词: Science & Technology ; Life Sciences & Biomedicine
类目[WOS]: Biochemistry & Molecular Biology ; Genetics & Heredity
研究领域[WOS]: Biochemistry & Molecular Biology ; Genetics & Heredity
英文摘要: Growth is one of the most important and desired economic traits for aquaculture species, and identification of loci controlling growth is a difficult task without genomic sequences. In this study, the liver transcriptomes of two groups (F and S) of bighead carp (Hypophthalmichthys nobilis) within a full-sib family with significant differences in growth rate were sequenced. Following de novo assembly of the combined reads from the two groups, a total of 410 differentially expressed genes were identified. Functional annotation and analysis of these genes indicated that some of these were involved in regulation of glucose levels and lipid metabolism, particularly fatty acid oxidation and transport. In addition to the differences on expression levels between the two groups, we also identified many non-synonymous coding single-nucleotide polymorphisms (SNPs) that were specific to each group, including SNPs from 4 genes involved in the lipid metabolism process (GO: 0006629). These differences in gene expression and DNA sequences may in part comprise the genetic background for the regulation of early growth rate in bighead carp. (C) 2016 Elsevier Inc. All rights reserved.
关键词[WOS]: RNA-SEQ DATA ; ARISTICHTHYS-NOBILIS ; REFERENCE GENOME ; I SYSTEM ; MOLITRIX ; FISH ; HORMONE ; MARKERS ; CLONING ; SNPS
语种: 英语
项目资助者: Knowledge Innovation Program of the Chinese Academy of Science ; National Natural Science Foundation of China(31472268) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences
WOS记录号: WOS:000389097500013
ISSN号: 1744-117X
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内容类型: 期刊论文
URI标识: http://ir.ihb.ac.cn/handle/342005/28697
Appears in Collections:鱼类生物学及渔业生物技术研究中心_期刊论文

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作者单位: 1.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430072, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
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