IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心
Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates
Fu, Beide1; Wang, Xinhua1,2; Feng, Xiu1,2; Yu, Xiaomu1; Tong, Jingou1
2016-12-01
Source PublicationCOMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
ISSN1744-117X
Volume20Pages:111-117
AbstractGrowth is one of the most important and desired economic traits for aquaculture species, and identification of loci controlling growth is a difficult task without genomic sequences. In this study, the liver transcriptomes of two groups (F and S) of bighead carp (Hypophthalmichthys nobilis) within a full-sib family with significant differences in growth rate were sequenced. Following de novo assembly of the combined reads from the two groups, a total of 410 differentially expressed genes were identified. Functional annotation and analysis of these genes indicated that some of these were involved in regulation of glucose levels and lipid metabolism, particularly fatty acid oxidation and transport. In addition to the differences on expression levels between the two groups, we also identified many non-synonymous coding single-nucleotide polymorphisms (SNPs) that were specific to each group, including SNPs from 4 genes involved in the lipid metabolism process (GO: 0006629). These differences in gene expression and DNA sequences may in part comprise the genetic background for the regulation of early growth rate in bighead carp. (C) 2016 Elsevier Inc. All rights reserved.
SubtypeArticle
KeywordBighead Carp Growth Rate Comparative Transcriptomics Rt-pcr
DOI10.1016/j.cbd.2016.08.006
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Funding OrganizationKnowledge Innovation Program of the Chinese Academy of Science ; Knowledge Innovation Program of the Chinese Academy of Science ; National Natural Science Foundation of China(31472268) ; National Natural Science Foundation of China(31472268) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Science ; Knowledge Innovation Program of the Chinese Academy of Science ; National Natural Science Foundation of China(31472268) ; National Natural Science Foundation of China(31472268) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences
Language英语
WOS Research AreaBiochemistry & Molecular Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Genetics & Heredity
WOS KeywordRNA-SEQ DATA ; ARISTICHTHYS-NOBILIS ; REFERENCE GENOME ; I SYSTEM ; MOLITRIX ; FISH ; HORMONE ; MARKERS ; CLONING ; SNPS
WOS IDWOS:000389097500013
Funding OrganizationKnowledge Innovation Program of the Chinese Academy of Science ; Knowledge Innovation Program of the Chinese Academy of Science ; National Natural Science Foundation of China(31472268) ; National Natural Science Foundation of China(31472268) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Science ; Knowledge Innovation Program of the Chinese Academy of Science ; National Natural Science Foundation of China(31472268) ; National Natural Science Foundation of China(31472268) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Open Funding of State Key Laboratory of Freshwater Ecology and Biotechnology of Institute of Hydrobiology, Chinese Academy of Sciences(2011FBZ20) ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center of the Chinese Academy of Sciences
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Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/28697
Collection鱼类生物学及渔业生物技术研究中心
Affiliation1.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430072, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
Recommended Citation
GB/T 7714
Fu, Beide,Wang, Xinhua,Feng, Xiu,et al. Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates[J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,2016,20:111-117.
APA Fu, Beide,Wang, Xinhua,Feng, Xiu,Yu, Xiaomu,&Tong, Jingou.(2016).Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates.COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,20,111-117.
MLA Fu, Beide,et al."Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates".COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 20(2016):111-117.
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