IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Unusual AT-skew of Sinorhodeus microlepis mitogenome provides new insights into mitogenome features and phylogenetic implications of bitterling fishes
Yu, Peng1,2; Zhou, Li1,2; Zhou, Xiao-Ya3; Yang, Wen-Tao1,2; Zhang, Jun3; Zhang, Xiao-Juan1; Wang, Yang1,2; Gui, Jian-Fang1,2
Corresponding AuthorWang, Yang(wangyang@ihb.ac.cn) ; Gui, Jian-Fang(jfgui@ihb.ac.cn)
2019-05-15
Source PublicationINTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
ISSN0141-8130
Volume129Pages:339-350
AbstractSinorhodeus microlepis (S. microlepis) is recently described as a new species and represents a new genus Sinorhodeu of the subfamily Acheilognathinae. In this study, we first sequenced the complete mitogenome of S. microlepis and compared with the other 29 bitterling mitogenomes. The S. microlepis mitogenome is 16,591 bp in length and contains 37 genes. Gene distribution pattern is identical among 30 bitterling mitogenomes. A significant linear correlation between A+T% and AT-skew were found among 29 bitterling mitogenomes, except S. microlepis shows unusual AT-skew with slightly negative in tRNAs and PCGs. Bitterling mitogenomes exhibit highly conserved usage bias of start codon, relative synonymous codons and amino acids, overlaps and non-coding intergenic spacers. Phylogenetic trees constructed by 13 PCGs strongly support the polyphyly of the genus Acheilognathus and the paraphyly of Rhodeus and Tanakia. Together with the unusual characters of S. microlepis mitogenomes and phylogenetic trees, S. microtepis should be a sister species to the genus Rhodeu that might diverge about 13.69 Ma (95% HPD: 12.96-14.48 Ma). 2019 Published by Elsevier B.V.
KeywordSinorhodeus microlepis Acheilognathinae mtDNA AT-skew Phylogeny Divergence time
DOI10.1016/j.ijbiomac.2019.01.200
Funding OrganizationStrategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China
Indexed BySCI ; SCI
Language英语
Funding ProjectStrategic Priority Research Program of the Chinese Academy of Sciences, China[XDB3104] ; Earmarked Fund for Modern Agro-industry Technology Research System, China[NYCYTX-49]
WOS Research AreaBiochemistry & Molecular Biology ; Chemistry ; Polymer Science
WOS SubjectBiochemistry & Molecular Biology ; Chemistry, Applied ; Polymer Science
WOS IDWOS:000466621200036
WOS KeywordCOMPLETE MITOCHONDRIAL GENOME ; FRESH-WATER FISH ; TELEOSTEI CYPRINIDAE ; COMPLETE SEQUENCE ; TRANSFER-RNAS ; CYPRINIFORMES ; EVOLUTION ; ACHEILOGNATHINAE ; PATTERNS ; MODEL
PublisherELSEVIER SCIENCE BV
Funding OrganizationStrategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Strategic Priority Research Program of the Chinese Academy of Sciences, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China ; Earmarked Fund for Modern Agro-industry Technology Research System, China
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/28478
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
鱼类生物学及渔业生物技术研究中心
Corresponding AuthorWang, Yang; Gui, Jian-Fang
Affiliation1.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Innovat Acad Seed Design, Wuhan 430072, Hubei, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Anhui Agr Univ, Coll Anim Sci & Technol, Hefei 230036, Anhui, Peoples R China
Recommended Citation
GB/T 7714
Yu, Peng,Zhou, Li,Zhou, Xiao-Ya,et al. Unusual AT-skew of Sinorhodeus microlepis mitogenome provides new insights into mitogenome features and phylogenetic implications of bitterling fishes[J]. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,2019,129:339-350.
APA Yu, Peng.,Zhou, Li.,Zhou, Xiao-Ya.,Yang, Wen-Tao.,Zhang, Jun.,...&Gui, Jian-Fang.(2019).Unusual AT-skew of Sinorhodeus microlepis mitogenome provides new insights into mitogenome features and phylogenetic implications of bitterling fishes.INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,129,339-350.
MLA Yu, Peng,et al."Unusual AT-skew of Sinorhodeus microlepis mitogenome provides new insights into mitogenome features and phylogenetic implications of bitterling fishes".INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 129(2019):339-350.
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