Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation | |
Wang, Kun1,2; Shen, Yanjun3,4; Yang, Yongzhi5; Gan, Xiaoni3; Liu, Guichun1; Hu, Kuang1; Li, Yongxin1; Gao, Zhaoming2; Zhu, Li5; Yan, Guoyong2; He, Lisheng2; Shan, Xiujuan6; Yang, Liandong3; Lu, Suxiang3; Zeng, Honghui3; Pan, Xiangyu7; Liu, Chang1; Yuan, Yuan1; Feng, Chenguang1; Xu, Wenjie1; Zhu, Chenglong1; Xiao, Wuhan3; Done, Yang8; Wang, Wen1,9,10; Qiu, Qiang1,5,9; He, Shunping2,3,4,10 | |
2019-05-01 | |
Source Publication | NATURE ECOLOGY & EVOLUTION
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ISSN | 2397-334X |
Volume | 3Issue:5Pages:823-833 |
Abstract | It is largely unknown how living organisms-especially vertebrates-survive and thrive in the coldness, darkness and high pressures of the hadal zone. Here, we describe the unique morphology and genome of Pseudoliparis swirei-a recently described snailfish species living below a depth of 6,000 m in the Mariana Trench. Unlike closely related shallow sea species, P. swirei has transparent, unpigmented skin and scales, thin and incompletely ossified bones, an inflated stomach and a non-closed skull. Phylogenetic analyses show that P. swirei diverged from a close relative living near the sea surface about 20 million years ago and has abundant genetic diversity. Genomic analyses reveal that: (1) the bone Gla protein (bglap) gene has a frameshift mutation that may cause early termination of cartilage calcification; (2) cell membrane fluidity and transport protein activity in P. swirei may have been enhanced by changes in protein sequences and gene expansion; and (3) the stability of its proteins may have been increased by critical mutations in the trimethylamine N-oxide-synthesizing enzyme and hsp90 chaperone protein. Our results provide insights into the morphological, physiological and molecular evolution of hadal vertebrates. |
DOI | 10.1038/s41559-019-0864-8 |
Funding Organization | Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; 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1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; 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National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; 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Indexed By | SCI |
Language | 英语 |
Funding Project | Strategic Priority Research Program of the Chinese Academy of Sciences[XDB060101] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB13020100] ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China[41876179] ; National Natural Science Foundation of China[31601858] ; National Program for Support of Top-notch Young Professionals ; National Key R&D Program of China[2018YFC0309800] ; Hong Kong Research Grants Council Area of Excellence Scheme[AoE/M-403/16] ; 1000 Talent Project of Shaanxi Province ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences |
WOS Research Area | Environmental Sciences & Ecology ; Evolutionary Biology |
WOS Subject | Ecology ; Evolutionary Biology |
WOS ID | WOS:000466498300021 |
WOS Keyword | PHYLOGENETIC ANALYSIS ; HYDROSTATIC-PRESSURE ; MOLECULAR EVOLUTION ; BAROPHILIC BACTERIA ; ADAPTIVE-CHANGES ; POPULATION-SIZE ; GENERATION TIME ; READ ALIGNMENT ; PROTEIN ; SEQUENCE |
Publisher | NATURE PUBLISHING GROUP |
Funding Organization | Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Program for Support of Top-notch Young Professionals ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; National Key R&D Program of China ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; Hong Kong Research Grants Council Area of Excellence Scheme ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; 1000 Talent Project of Shaanxi Province ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Wuhan Branch of the Supercomputing Center at the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; Talents Team Construction Fund of Northwestern Polytechnical University ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 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Citation statistics | |
Document Type | 期刊论文 |
Identifier | http://ir.ihb.ac.cn/handle/342005/28113 |
Collection | 水生生物多样性与资源保护研究中心 |
Corresponding Author | Wang, Wen; Qiu, Qiang; He, Shunping |
Affiliation | 1.Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian, Shaanxi, Peoples R China 2.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya, Peoples R China 3.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan, Hubei, Peoples R China 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.Lanzhou Univ, State Key Lab Grassland Agroecosyst, Sch Life Sci, Lanzhou, Gansu, Peoples R China 6.Minist Agr & Rural Affairs, Key Lab Sustainable Dev Marine Fisheries, Qingdao, Shandong, Peoples R China 7.Northwest A&F Univ, Coll Anim Sci & Technol, Xianyang, Peoples R China 8.Yunnan Agr Univ, Biol Big Data Coll, Kunming, Yunnan, Peoples R China 9.Northwestern Polytech Univ, Qingdao Res Inst, Qingdao, Shandong, Peoples R China 10.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming Inst Zool, Kunming, Yunnan, Peoples R China |
Recommended Citation GB/T 7714 | Wang, Kun,Shen, Yanjun,Yang, Yongzhi,et al. Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation[J]. NATURE ECOLOGY & EVOLUTION,2019,3(5):823-833. |
APA | Wang, Kun.,Shen, Yanjun.,Yang, Yongzhi.,Gan, Xiaoni.,Liu, Guichun.,...&He, Shunping.(2019).Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation.NATURE ECOLOGY & EVOLUTION,3(5),823-833. |
MLA | Wang, Kun,et al."Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation".NATURE ECOLOGY & EVOLUTION 3.5(2019):823-833. |
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