IHB OpenIR  > 水生生物分子与细胞生物学研究中心  > 期刊论文
CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp PCC 7002
Yang, Yaohua1,2; Feng, Jie1,2; Li, Tao1; Ge, Feng1; Zhao, Jindong1,3; Li, T (reprint author), Chinese Acad Sci, Inst Hydrobiol, Key Lab Algal Biol, Wuhan 430072, Peoples R China.
2015-01-28
Source PublicationDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
ISSN1758-0463
Issue*Pages:bau127
AbstractCyanobacteria are an important group of organisms that carry out oxygenic photosynthesis and play vital roles in both the carbon and nitrogen cycles of the Earth. The annotated genome of Synechococcus sp. PCC 7002, as an ideal model cyanobacterium, is available. A series of transcriptomic and proteomic studies of Synechococcus sp. PCC 7002 cells grown under different conditions have been reported. However, no database of such integrated omics studies has been constructed. Here we present CyanOmics, a database based on the results of Synechococcus sp. PCC 7002 omics studies. CyanOmics comprises one genomic dataset, 29 transcriptomic datasets and one proteomic dataset and should prove useful for systematic and comprehensive analysis of all those data. Powerful browsing and searching tools are integrated to help users directly access information of interest with enhanced visualization of the analytical results. Furthermore, Blast is included for sequence-based similarity searching and Cluster 3.0, as well as the R hclust function is provided for cluster analyses, to increase CyanOmics's usefulness. To the best of our knowledge, it is the first integrated omics analysis database for cyanobacteria. This database should further understanding of the transcriptional patterns, and proteomic profiling of Synechococcus sp. PCC 7002 and other cyanobacteria. Additionally, the entire database framework is applicable to any sequenced prokaryotic genome and could be applied to other integrated omics analysis projects.
SubtypeArticle
Department[Yang, Yaohua ; Feng, Jie ; Li, Tao ; Ge, Feng ; Zhao, Jindong] Chinese Acad Sci, Inst Hydrobiol, Key Lab Algal Biol, Wuhan 430072, Peoples R China ; [Yang, Yaohua ; Feng, Jie] Univ Chinese Acad Sci, Beijing 100049, Peoples R China ; [Zhao, Jindong] Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
DOI10.1093/database/bau127
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaMathematical & Computational Biology
WOS SubjectMathematical & Computational Biology
WOS IDWOS:000348650000003
WOS KeywordOXIDATIVE STRESS ; SP PCC-7002 ; HIGH-LIGHT ; GENOME ; GENERATION ; SEQUENCE ; GROWTH ; MUTANT ; ROLES
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Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/23998
Collection水生生物分子与细胞生物学研究中心_期刊论文
Corresponding AuthorLi, T (reprint author), Chinese Acad Sci, Inst Hydrobiol, Key Lab Algal Biol, Wuhan 430072, Peoples R China.
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Key Lab Algal Biol, Wuhan 430072, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
Recommended Citation
GB/T 7714
Yang, Yaohua,Feng, Jie,Li, Tao,et al. CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp PCC 7002[J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,2015(*):bau127.
APA Yang, Yaohua,Feng, Jie,Li, Tao,Ge, Feng,Zhao, Jindong,&Li, T .(2015).CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp PCC 7002.DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION(*),bau127.
MLA Yang, Yaohua,et al."CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp PCC 7002".DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION .*(2015):bau127.
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