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The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation
Wang, Yaping1; Lu, Ying2; Zhang, Yong3,4; Ning, Zemin5; Li, Yan2; Zhao, Qiang2; Lu, Hengyun2; Huang, Rong1; Xia, Xiaoqin1; Feng, Qi2; Liang, Xufang6,7; Liu, Kunyan2; Zhang, Lei2; Lu, Tingting2; Huang, Tao2; Fan, Danlin2; Weng, Qijun2; Zhu, Chuanrang2; Lu, Yiqi2; Li, Wenjun2; Wen, Ziruo2; Zhou, Congcong2; Tian, Qilin2; Kang, Xiaojun1,8; Shi, Mijuan1; Zhang, Wanting1; Jang, Songhun1,9; Du, Fukuan1; He, Shan6; Liao, Lanjie1; Li, Yongming1; Gui, Bin1; He, Huihui1; Ning, Zhen1; Yang, Cheng1,8; He, Libo1; Luo, Lifei1; Yang, Rui10; Luo, Qiong10; Liu, Xiaochun3,4; Li, Shuisheng3,4; Huang, Wen3,4; Xiao, Ling3,4; Lin, Haoran3,4; Han, Bin2; Zhu, Zuoyan1; Wang, YP (reprint author), Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China.
2015-06-01
Source PublicationNATURE GENETICS
ISSN1061-4036
Volume47Issue:6Pages:625-631
AbstractThe grass carp is an important farmed fish, accounting for similar to 16% of global freshwater aquaculture, and has a vegetarian diet. Here we report a 0.9-Gb draft genome of a gynogenetic female adult and a 1.07-Gb genome of a wild male adult. Genome annotation identified 27,263 protein-coding gene models in the female genome. A total of 114 scaffolds consisting of 573 Mb are anchored on 24 linkage groups. Divergence between grass carp and zebrafish is estimated to have occurred 49-54 million years ago. We identify a chromosome fusion in grass carp relative to zebrafish and report frequent crossovers between the grass carp X and Y chromosomes. We find that transcriptional activation of the mevalonate pathway and steroid biosynthesis in liver is associated with the grass carp's adaptation from a carnivorous to an herbivorous diet. We believe that the grass carp genome could serve as an initial platform for breeding better-quality fish using a genomic approach.
SubtypeArticle
Department[Wang, Yaping ; Huang, Rong ; Xia, Xiaoqin ; Kang, Xiaojun ; Shi, Mijuan ; Zhang, Wanting ; Jang, Songhun ; Du, Fukuan ; Liao, Lanjie ; Li, Yongming ; Gui, Bin ; He, Huihui ; Ning, Zhen ; Yang, Cheng ; He, Libo ; Luo, Lifei ; Zhu, Zuoyan] Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China ; [Lu, Ying ; Li, Yan ; Zhao, Qiang ; Lu, Hengyun ; Feng, Qi ; Liu, Kunyan ; Zhang, Lei ; Lu, Tingting ; Huang, Tao ; Fan, Danlin ; Weng, Qijun ; Zhu, Chuanrang ; Lu, Yiqi ; Li, Wenjun ; Wen, Ziruo ; Zhou, Congcong ; Tian, Qilin ; Han, Bin] Chinese Acad Sci, Shanghai Inst Biol Sci, Shanghai Inst Plant Physiol & Ecol, Natl Ctr Gene Res, Shanghai, Peoples R China ; [Zhang, Yong ; Liu, Xiaochun ; Li, Shuisheng ; Huang, Wen ; Xiao, Ling ; Lin, Haoran] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China ; [Zhang, Yong ; Liu, Xiaochun ; Li, Shuisheng ; Huang, Wen ; Xiao, Ling ; Lin, Haoran] Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Aquat Econ Anim, Guangzhou 510275, Guangdong, Peoples R China ; [Ning, Zemin] Wellcome Trust Sanger Inst, Hinxton, England ; [Liang, Xufang ; He, Shan] Huazhong Agr Univ, Coll Fisheries, Minist Agr, Key Lab Freshwater Anim Breeding, Wuhan, Peoples R China ; [Liang, Xufang] Huazhong Agr Univ, Coll Fisheries, Freshwater Aquaculture Collaborat Innovat Ctr Hu, Wuhan, Peoples R China ; [Kang, Xiaojun ; Yang, Cheng] China Univ Geosci, Sch Comp Sci, Wuhan 430074, Peoples R China ; [Jang, Songhun] Kim Illinois Sung Univ, Coll Life Sci, Pyongyang, North Korea ; [Yang, Rui ; Luo, Qiong] Yunnan Agr Univ, Coll Plant Protect, Kunming, Peoples R China
DOI10.1038/ng.3280
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000355386500013
WOS KeywordMOLECULAR CHARACTERIZATION ; EXPRESSION ANALYSIS ; ORGAN SIZE ; GENE ; ZEBRAFISH ; IDENTIFICATION ; FISH ; BIOSYNTHESIS ; DUPLICATION ; DISCOVERY
Citation statistics
Cited Times:122[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/23892
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorWang, YP (reprint author), Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China.
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
2.Chinese Acad Sci, Shanghai Inst Biol Sci, Shanghai Inst Plant Physiol & Ecol, Natl Ctr Gene Res, Shanghai, Peoples R China
3.Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
4.Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Aquat Econ Anim, Guangzhou 510275, Guangdong, Peoples R China
5.Wellcome Trust Sanger Inst, Hinxton, England
6.Huazhong Agr Univ, Coll Fisheries, Minist Agr, Key Lab Freshwater Anim Breeding, Wuhan, Peoples R China
7.Huazhong Agr Univ, Coll Fisheries, Freshwater Aquaculture Collaborat Innovat Ctr Hu, Wuhan, Peoples R China
8.China Univ Geosci, Sch Comp Sci, Wuhan 430074, Peoples R China
9.Kim Illinois Sung Univ, Coll Life Sci, Pyongyang, North Korea
10.Yunnan Agr Univ, Coll Plant Protect, Kunming, Peoples R China
Recommended Citation
GB/T 7714
Wang, Yaping,Lu, Ying,Zhang, Yong,et al. The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation[J]. NATURE GENETICS,2015,47(6):625-631.
APA Wang, Yaping.,Lu, Ying.,Zhang, Yong.,Ning, Zemin.,Li, Yan.,...&Wang, YP .(2015).The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.NATURE GENETICS,47(6),625-631.
MLA Wang, Yaping,et al."The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation".NATURE GENETICS 47.6(2015):625-631.
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