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Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)
Yang, Lei1; Sado, Tetsuya2; Hirt, M. Vincent3; Pasco-Viel, Emmanuel4,5; Arunachalam, M.6; Li, Junbing7; Wang, Xuzhen7; Freyhof, Joerg8; Saitoh, Kenji9; Simons, Andrew M.10,11; Miya, Masaki2; He, Shunping7; Mayden, Richard L.1; Yang, L (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA.
2015-04-01
Source PublicationMOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
Volume85Issue:*Pages:97-116
AbstractCyprininae is the largest subfamily (>1300 species) of the family Cyprinidae and contains more polyploid species (similar to 400) than any other group of fishes. We examined the phylogenetic relationships of the Cyprininae based on extensive taxon, geographical, and genomic sampling of the taxa, using both mitochondria] and nuclear genes to address the phylogenetic challenges posed by polyploidy. Four datasets were analyzed in this study: two mitochondria] gene datasets (465 and 791 taxa, 5604 bp), a mitogenome dataset (85 taxa, 14,771 bp), and a cloned nuclear RAG1 dataset (97 taxa, 1497 bp). Based on resulting trees, the subfamily Cyprininae was subdivided into 11 tribes: Probarbini (new; Probarbus + Catlocarpio), Labeonini Bleeker, 1859 (Labeo & allies), Torini Karaman, 1971 (Tor, Labeobarbus & allies), Smiliogastrini Bleeker, 1863 (Puntius, Enteromius & allies), Poropuntiini (Poropuntius & allies), Cyprinini Rafinesque, 1815 (Cyprinus & allies), Acrossocheilini (new; Acrossocheilus & allies), Spinibarbini (new; Spinibarbus), Schizothoracini McClelland, 1842 (Schizothorax & allies), Schizopygopsini Mirza, 1991 (Schizopygopsis & allies), and Barbini Bleeker, 1859 (Barbus & allies). Phylogenetic relationships within each tribe were discussed. Two or three distinct RAG1 lineages were identified for each of the following tribes Torini, Cyprinini, Spinibarbini, and Barbini, indicating their hybrid origin. The hexaploid African Labeobarbus & allies and Western Asian Capoeta are likely derived from two independent hybridization events between their respective maternal tetraploid ancestors and Cyprinion. (C) 2015 Elsevier Inc. All rights reserved.
SubtypeArticle
KeywordBiogeography Cyprinidae Evolution Hexaploids Taxonomy Tetraploids
Department[Yang, Lei ; Mayden, Richard L.] St Louis Univ, Dept Biol, St Louis, MO 63103 USA ; [Sado, Tetsuya ; Miya, Masaki] Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba 2608682, Japan ; [Hirt, M. Vincent] Univ Minnesota, Grad Program Ecol Evolut & Behav, St Paul, MN 55108 USA ; [Pasco-Viel, Emmanuel] Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Evodevo Vertebrate Dentit,IGFL, F-69007 Lyon, France ; [Pasco-Viel, Emmanuel] Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Mol Zool,IGFL, F-69007 Lyon, France ; [Arunachalam, M.] Manonmaniam Sundaranar Univ, Sri Paramakalyani Ctr Environm Sci, Alwarkurichi 627412, Tamil Nadu, India ; [Li, Junbing ; Wang, Xuzhen ; He, Shunping] Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China ; [Freyhof, Joerg] German Ctr Integrat Biodivers Res iDiv, Halle Jena Leipzig, D-04103 Leipzig, Germany ; [Saitoh, Kenji] Natl Res Inst Fisheries Sci, Aquat Genom Res Ctr, Kanazawa Ku, Yokohama, Kanagawa 2368648, Japan ; [Simons, Andrew M.] Univ Minnesota, Dept Fisheries Wildlife & Conservat Biol, St Paul, MN 55108 USA ; [Simons, Andrew M.] Univ Minnesota, Bell Museum Nat Hist, St Paul, MN 55108 USA
DOI10.1016/j.ympev.2015.01.014
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS IDWOS:000352825700011
WOS KeywordCYTOCHROME-B SEQUENCES ; GENUS SCHIZOTHORAX TELEOSTEI ; MOLECULAR PHYLOGENY ; PARTITIONING SCHEMES ; SPECIES CYPRINIDAE ; SPINED LOACH ; MISSING DATA ; SMALL BARBUS ; EVOLUTION ; GENOME
Citation statistics
Cited Times:78[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/23831
Collection水生生物多样性与资源保护研究中心_期刊论文
Corresponding AuthorYang, L (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA.
Affiliation1.St Louis Univ, Dept Biol, St Louis, MO 63103 USA
2.Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba 2608682, Japan
3.Univ Minnesota, Grad Program Ecol Evolut & Behav, St Paul, MN 55108 USA
4.Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Evodevo Vertebrate Dentit,IGFL, F-69007 Lyon, France
5.Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Mol Zool,IGFL, F-69007 Lyon, France
6.Manonmaniam Sundaranar Univ, Sri Paramakalyani Ctr Environm Sci, Alwarkurichi 627412, Tamil Nadu, India
7.Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China
8.German Ctr Integrat Biodivers Res iDiv, Halle Jena Leipzig, D-04103 Leipzig, Germany
9.Natl Res Inst Fisheries Sci, Aquat Genom Res Ctr, Kanazawa Ku, Yokohama, Kanagawa 2368648, Japan
10.Univ Minnesota, Dept Fisheries Wildlife & Conservat Biol, St Paul, MN 55108 USA
11.Univ Minnesota, Bell Museum Nat Hist, St Paul, MN 55108 USA
Recommended Citation
GB/T 7714
Yang, Lei,Sado, Tetsuya,Hirt, M. Vincent,et al. Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2015,85(*):97-116.
APA Yang, Lei.,Sado, Tetsuya.,Hirt, M. Vincent.,Pasco-Viel, Emmanuel.,Arunachalam, M..,...&Yang, L .(2015).Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes).MOLECULAR PHYLOGENETICS AND EVOLUTION,85(*),97-116.
MLA Yang, Lei,et al."Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)".MOLECULAR PHYLOGENETICS AND EVOLUTION 85.*(2015):97-116.
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