| Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes) | |
| Yang, Lei1; Sado, Tetsuya2; Hirt, M. Vincent3; Pasco-Viel, Emmanuel4,5; Arunachalam, M.6; Li, Junbing7; Wang, Xuzhen7; Freyhof, Joerg8; Saitoh, Kenji9; Simons, Andrew M.10,11; Miya, Masaki2; He, Shunping7; Mayden, Richard L.1; Yang, L (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA. | |
| 2015-04-01 | |
| Source Publication | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| ISSN | 1055-7903 |
| Volume | 85Issue:*Pages:97-116 |
| Abstract | Cyprininae is the largest subfamily (>1300 species) of the family Cyprinidae and contains more polyploid species (similar to 400) than any other group of fishes. We examined the phylogenetic relationships of the Cyprininae based on extensive taxon, geographical, and genomic sampling of the taxa, using both mitochondria] and nuclear genes to address the phylogenetic challenges posed by polyploidy. Four datasets were analyzed in this study: two mitochondria] gene datasets (465 and 791 taxa, 5604 bp), a mitogenome dataset (85 taxa, 14,771 bp), and a cloned nuclear RAG1 dataset (97 taxa, 1497 bp). Based on resulting trees, the subfamily Cyprininae was subdivided into 11 tribes: Probarbini (new; Probarbus + Catlocarpio), Labeonini Bleeker, 1859 (Labeo & allies), Torini Karaman, 1971 (Tor, Labeobarbus & allies), Smiliogastrini Bleeker, 1863 (Puntius, Enteromius & allies), Poropuntiini (Poropuntius & allies), Cyprinini Rafinesque, 1815 (Cyprinus & allies), Acrossocheilini (new; Acrossocheilus & allies), Spinibarbini (new; Spinibarbus), Schizothoracini McClelland, 1842 (Schizothorax & allies), Schizopygopsini Mirza, 1991 (Schizopygopsis & allies), and Barbini Bleeker, 1859 (Barbus & allies). Phylogenetic relationships within each tribe were discussed. Two or three distinct RAG1 lineages were identified for each of the following tribes Torini, Cyprinini, Spinibarbini, and Barbini, indicating their hybrid origin. The hexaploid African Labeobarbus & allies and Western Asian Capoeta are likely derived from two independent hybridization events between their respective maternal tetraploid ancestors and Cyprinion. (C) 2015 Elsevier Inc. All rights reserved. |
| Subtype | Article |
| Keyword | Biogeography Cyprinidae Evolution Hexaploids Taxonomy Tetraploids |
| Department | [Yang, Lei ; Mayden, Richard L.] St Louis Univ, Dept Biol, St Louis, MO 63103 USA ; [Sado, Tetsuya ; Miya, Masaki] Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba 2608682, Japan ; [Hirt, M. Vincent] Univ Minnesota, Grad Program Ecol Evolut & Behav, St Paul, MN 55108 USA ; [Pasco-Viel, Emmanuel] Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Evodevo Vertebrate Dentit,IGFL, F-69007 Lyon, France ; [Pasco-Viel, Emmanuel] Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Mol Zool,IGFL, F-69007 Lyon, France ; [Arunachalam, M.] Manonmaniam Sundaranar Univ, Sri Paramakalyani Ctr Environm Sci, Alwarkurichi 627412, Tamil Nadu, India ; [Li, Junbing ; Wang, Xuzhen ; He, Shunping] Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China ; [Freyhof, Joerg] German Ctr Integrat Biodivers Res iDiv, Halle Jena Leipzig, D-04103 Leipzig, Germany ; [Saitoh, Kenji] Natl Res Inst Fisheries Sci, Aquat Genom Res Ctr, Kanazawa Ku, Yokohama, Kanagawa 2368648, Japan ; [Simons, Andrew M.] Univ Minnesota, Dept Fisheries Wildlife & Conservat Biol, St Paul, MN 55108 USA ; [Simons, Andrew M.] Univ Minnesota, Bell Museum Nat Hist, St Paul, MN 55108 USA |
| DOI | 10.1016/j.ympev.2015.01.014 |
| WOS Headings | Science & Technology ; Life Sciences & Biomedicine |
| Indexed By | SCI |
| Language | 英语 |
| WOS Research Area | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| WOS Subject | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| WOS ID | WOS:000352825700011 |
| WOS Keyword | CYTOCHROME-B SEQUENCES ; GENUS SCHIZOTHORAX TELEOSTEI ; MOLECULAR PHYLOGENY ; PARTITIONING SCHEMES ; SPECIES CYPRINIDAE ; SPINED LOACH ; MISSING DATA ; SMALL BARBUS ; EVOLUTION ; GENOME |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/342005/23831 |
| Collection | 水生生物多样性与资源保护研究中心_期刊论文 |
| Corresponding Author | Yang, L (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA. |
| Affiliation | 1.St Louis Univ, Dept Biol, St Louis, MO 63103 USA 2.Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba 2608682, Japan 3.Univ Minnesota, Grad Program Ecol Evolut & Behav, St Paul, MN 55108 USA 4.Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Evodevo Vertebrate Dentit,IGFL, F-69007 Lyon, France 5.Univ Lyon 1, Ecole Normale Super Lyon, UMR CNRS 5242, Mol Zool,IGFL, F-69007 Lyon, France 6.Manonmaniam Sundaranar Univ, Sri Paramakalyani Ctr Environm Sci, Alwarkurichi 627412, Tamil Nadu, India 7.Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China 8.German Ctr Integrat Biodivers Res iDiv, Halle Jena Leipzig, D-04103 Leipzig, Germany 9.Natl Res Inst Fisheries Sci, Aquat Genom Res Ctr, Kanazawa Ku, Yokohama, Kanagawa 2368648, Japan 10.Univ Minnesota, Dept Fisheries Wildlife & Conservat Biol, St Paul, MN 55108 USA 11.Univ Minnesota, Bell Museum Nat Hist, St Paul, MN 55108 USA |
| Recommended Citation GB/T 7714 | Yang, Lei,Sado, Tetsuya,Hirt, M. Vincent,et al. Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2015,85(*):97-116. |
| APA | Yang, Lei.,Sado, Tetsuya.,Hirt, M. Vincent.,Pasco-Viel, Emmanuel.,Arunachalam, M..,...&Yang, L .(2015).Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes).MOLECULAR PHYLOGENETICS AND EVOLUTION,85(*),97-116. |
| MLA | Yang, Lei,et al."Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)".MOLECULAR PHYLOGENETICS AND EVOLUTION 85.*(2015):97-116. |
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| Phylogeny and polypl（2091KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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