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Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages
Gentekaki, E.1; Kolisko, M.1,2; Boscaro, V.3; Bright, K. J.4; Dini, F.3; Di Giuseppe, G.3; Gong, Y.5; Miceli, C.6; Modeo, L.3; Molestina, R. E.7; Petroni, G.3; Pucciarelli, S.6; Roger, A. J.1; Strom, S. L.4; Lynn, D. H.8
2014-09-01
Source PublicationMOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
Volume78Issue:-Pages:36-42
AbstractThe Ciliophora is one of the most studied protist lineages because of its important ecological role in the microbial loop. While there is an abundance of molecular data for many ciliate groups, it is commonly limited to the 18S ribosomal RNA locus. There is a paucity of data when it comes to availability of protein-coding genes especially for taxa that do not belong to the class Oligohymenophorea. To address this gap, we have sequenced EST libraries for 11 ciliate species. A supermatrix was constructed for phylogenomic analysis based on 158 genes and 42,158 characters and included 16 ciliates, four dinoflagellates and nine apicomplexans. This is the first multigene-based analysis focusing on the phylum Ciliophora. Our analyses reveal two robust superclades within the Intramacronucleata; one composed of the classes Spirotrichea, Armophorea and Litostomatea (SAL) and another with Colpodea and Oligohymenophorea. Furthermore, we provide corroborative evidence for removing the ambiguous taxon Protocruzia from the class Spirotrichea and placing it as incertae sedis in the phylum Ciliophora. (C) 2014 Elsevier Inc. All rights reserved.
SubtypeArticle
KeywordCiliophora Phylogenomics Conthreep Protocruzia Sal
DOI10.1016/j.ympev.2014.04.020
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS IDWOS:000342480400004
WOS KeywordRNA GENE-SEQUENCES ; EXTENSIVE CHROMOSOMAL FRAGMENTATION ; PHYLUM-CILIOPHORA ; MOLECULAR PHYLOGENY ; EUKARYOTIC SUPERGROUPS ; PARAMECIUM-TETRAURELIA ; MULTIGENE ANALYSES ; HISTONE H4 ; EVOLUTION ; SYSTEMATICS
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Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/20307
Collection淡水生态学研究中心_期刊论文
Affiliation1.Dalhousie Univ, Dept Biochem & Mol Biol, Halifax, NS B3H 4R2, Canada
2.Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada
3.Univ Pisa, Dept Biol, I-56126 Pisa, Italy
4.Western Washington Univ, Shannon Point Marine Ctr, Anacortes, WA 98221 USA
5.Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China
6.Univ Camerino, Sch Biosci & Biotechnol, I-62032 Camerino, Italy
7.Amer Type Culture Collect, Protistol Dept, Manassas, VA 20110 USA
8.Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada
Recommended Citation
GB/T 7714
Gentekaki, E.,Kolisko, M.,Boscaro, V.,et al. Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2014,78(-):36-42.
APA Gentekaki, E..,Kolisko, M..,Boscaro, V..,Bright, K. J..,Dini, F..,...&Lynn, D. H..(2014).Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages.MOLECULAR PHYLOGENETICS AND EVOLUTION,78(-),36-42.
MLA Gentekaki, E.,et al."Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages".MOLECULAR PHYLOGENETICS AND EVOLUTION 78.-(2014):36-42.
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