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Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV)
Zhu, Ruo-Lin; Zhang, Qi-Ya; Zhang, QY (reprint author), Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China.
2014-04-01
Source PublicationARCHIVES OF VIROLOGY
ISSN0304-8608
Volume159Issue:4Pages:817-820
AbstractParalichthys olivaceus rhabdovirus (PORV), which is associated with high mortality rates in flounder, was isolated in China in 2005. Here, we provide an annotated sequence record of PORV, the genome of which comprises 11,182 nucleotides and contains six genes in the order 3'-N-P-M-G-NV-L-5'. Phylogenetic analysis based on glycoprotein sequences of PORV and other rhabdoviruses showed that PORV clusters with viral haemorrhagic septicemia virus (VHSV), genus Novirhabdovirus, family Rhabdoviridae. Further phylogenetic analysis of the combined amino acid sequences of six proteins of PORV and VHSV strains showed that PORV clusters with Korean strains and is closely related to Asian strains, all of which were isolated from flounder. In a comparison in which the sequences of the six proteins were combined, PORV shared the highest identity (98.3 %) with VHSV strain KJ2008 from Korea.; Paralichthys olivaceus rhabdovirus (PORV), which is associated with high mortality rates in flounder, was isolated in China in 2005. Here, we provide an annotated sequence record of PORV, the genome of which comprises 11,182 nucleotides and contains six genes in the order 3'-N-P-M-G-NV-L-5'. Phylogenetic analysis based on glycoprotein sequences of PORV and other rhabdoviruses showed that PORV clusters with viral haemorrhagic septicemia virus (VHSV), genus Novirhabdovirus, family Rhabdoviridae. Further phylogenetic analysis of the combined amino acid sequences of six proteins of PORV and VHSV strains showed that PORV clusters with Korean strains and is closely related to Asian strains, all of which were isolated from flounder. In a comparison in which the sequences of the six proteins were combined, PORV shared the highest identity (98.3 %) with VHSV strain KJ2008 from Korea.
SubtypeArticle
KeywordHemorrhagic Septicemia Virus Olive Flounder Vhsv Evolution Fish Gene
Department[Zhu, Ruo-Lin ; Zhang, Qi-Ya] Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
DOI10.1007/s00705-013-1716-5
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Funding OrganizationNational Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16]
Indexed BySCI
Language英语
WOS Research AreaVirology
WOS SubjectVirology
WOS IDWOS:000334055200024
WOS KeywordHEMORRHAGIC SEPTICEMIA VIRUS ; OLIVE FLOUNDER ; VHSV ; EVOLUTION ; FISH ; GENE
Funding OrganizationNational Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16]
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Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/20043
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorZhang, QY (reprint author), Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China.
AffiliationChinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
Recommended Citation
GB/T 7714
Zhu, Ruo-Lin,Zhang, Qi-Ya,Zhang, QY . Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV)[J]. ARCHIVES OF VIROLOGY,2014,159(4):817-820.
APA Zhu, Ruo-Lin,Zhang, Qi-Ya,&Zhang, QY .(2014).Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV).ARCHIVES OF VIROLOGY,159(4),817-820.
MLA Zhu, Ruo-Lin,et al."Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV)".ARCHIVES OF VIROLOGY 159.4(2014):817-820.
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