| Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV) | |
| Zhu, Ruo-Lin; Zhang, Qi-Ya; Zhang, QY (reprint author), Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China. | |
| 2014-04-01 | |
| Source Publication | ARCHIVES OF VIROLOGY
 |
| ISSN | 0304-8608 |
| Volume | 159Issue:4Pages:817-820 |
| Abstract | Paralichthys olivaceus rhabdovirus (PORV), which is associated with high mortality rates in flounder, was isolated in China in 2005. Here, we provide an annotated sequence record of PORV, the genome of which comprises 11,182 nucleotides and contains six genes in the order 3'-N-P-M-G-NV-L-5'. Phylogenetic analysis based on glycoprotein sequences of PORV and other rhabdoviruses showed that PORV clusters with viral haemorrhagic septicemia virus (VHSV), genus Novirhabdovirus, family Rhabdoviridae. Further phylogenetic analysis of the combined amino acid sequences of six proteins of PORV and VHSV strains showed that PORV clusters with Korean strains and is closely related to Asian strains, all of which were isolated from flounder. In a comparison in which the sequences of the six proteins were combined, PORV shared the highest identity (98.3 %) with VHSV strain KJ2008 from Korea.; Paralichthys olivaceus rhabdovirus (PORV), which is associated with high mortality rates in flounder, was isolated in China in 2005. Here, we provide an annotated sequence record of PORV, the genome of which comprises 11,182 nucleotides and contains six genes in the order 3'-N-P-M-G-NV-L-5'. Phylogenetic analysis based on glycoprotein sequences of PORV and other rhabdoviruses showed that PORV clusters with viral haemorrhagic septicemia virus (VHSV), genus Novirhabdovirus, family Rhabdoviridae. Further phylogenetic analysis of the combined amino acid sequences of six proteins of PORV and VHSV strains showed that PORV clusters with Korean strains and is closely related to Asian strains, all of which were isolated from flounder. In a comparison in which the sequences of the six proteins were combined, PORV shared the highest identity (98.3 %) with VHSV strain KJ2008 from Korea. |
| Subtype | Article |
| Keyword | Hemorrhagic Septicemia Virus Olive Flounder Vhsv Evolution Fish Gene |
| Department | [Zhu, Ruo-Lin ; Zhang, Qi-Ya] Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China |
| DOI | 10.1007/s00705-013-1716-5 |
| WOS Headings | Science & Technology ; Life Sciences & Biomedicine |
| Funding Organization | National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] |
| Indexed By | SCI |
| Language | 英语 |
| WOS Research Area | Virology |
| WOS Subject | Virology |
| WOS ID | WOS:000334055200024 |
| WOS Keyword | HEMORRHAGIC SEPTICEMIA VIRUS ; OLIVE FLOUNDER ; VHSV ; EVOLUTION ; FISH ; GENE |
| Funding Organization | National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] ; National Natural Science Foundation of China [31072239, 31270213]; FEBL [2011FBZ12, 2008FBZ16] |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/342005/20043 |
| Collection | 鱼类生物学及渔业生物技术研究中心_期刊论文 |
| Corresponding Author | Zhang, QY (reprint author), Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China. |
| Affiliation | Chinese Acad Sci, Grad Sch, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China |
| Recommended Citation GB/T 7714 | Zhu, Ruo-Lin,Zhang, Qi-Ya,Zhang, QY . Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV)[J]. ARCHIVES OF VIROLOGY,2014,159(4):817-820. |
| APA | Zhu, Ruo-Lin,Zhang, Qi-Ya,&Zhang, QY .(2014).Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV).ARCHIVES OF VIROLOGY,159(4),817-820. |
| MLA | Zhu, Ruo-Lin,et al."Determination and analysis of the complete genome sequence of Paralichthys olivaceus rhabdovirus (PORV)".ARCHIVES OF VIROLOGY 159.4(2014):817-820. |
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