IHB OpenIR  > 鱼类生物学及渔业生物技术研究中心  > 期刊论文
Identification and functional characterizations of a novel TRIF gene from grass carp (Ctenopharyngodon idella)
Yang, Chunrong1; Li, Qingmei1; Su, Jianguo2; Chen, Xiaohui2; Wang, Yaping3; Peng, Limin2; Su, JG (reprint author), Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China.
2013-10-01
Source PublicationDEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
ISSN0145-305X
Volume41Issue:2Pages:222-229
AbstractToll/interleukin-1 receptor (TIR) domain containing adapter inducing interferon-beta (TRIF) is an adapter in responding to activation of some toll-like receptors (TLRs), which provides early clearance of viral and bacterial pathogens. Here we identified and characterized a full-length genomic sequence of TRIF gene from grass carp Ctenophatyngodon idella (designated as CiTRIF). CiTRIF genomic sequence consists of 3534 base pairs (bp), containing 5' flank sequence (496 bp) and unique intron (815 bp). The full-length cDNA sequence is 2241 bp, including 5' untranslated region (UTR) of 352 bp, 3' UTR of 209 bp, and an open reading frame of 1680 bp encoding a polypeptide of 559 amino acids with an estimated molecular weight of 62.643 kDa and a predicted isoelectric point of 5.71. The deduced amino acid sequence just contains TIR domain, and is most similar to the zebrafish (Danio rerio) TRIF sequence with an identity of 64%. CiTRIF exhibits sequence divergence from its orthologs. Promoter region was predicted and promoter activity was verified. mRNA expression of CiTRIF gene is widespread in 15 tissues investigated, highly in foregut and skin physiological immune barrier. The transcripts of CiTRIF were significantly and rapidly induced in spleen and head kidney tissues at early stage post grass carp reovirus (GCRV) challenge. The modulations are significant but mild in CIK (C idella kidney) cells post GCRV infection or poly(I:C) stimulation. The over-expression vector was constructed and transfected into CIK cell line to get stably expressing recombinant proteins. In CiTRIF transfected cells, mRNA expressions of CiTRIF, CiRIG-I, CiIRF7 and CilFN-I were up-regulated. After GCRV infection, the transcripts of CiTRIF, CiRIG-I, CiIRF7 and CifFN-I fell a little bit after a rapidly and strongly rise. In CiTRIF over-expression cells, virus load and titer were significantly lower than those in controls post GCRV challenge, and virus replication was inhibited obviously. The results indicate that the novel TRIF gene from grass carp plays important roles in modulating antiviral innate immune responses, and serve the further functional studies on TRIF gene in teleosts and immune evolution. (C) 2013 Elsevier Ltd. All rights reserved.; Toll/interleukin-1 receptor (TIR) domain containing adapter inducing interferon-beta (TRIF) is an adapter in responding to activation of some toll-like receptors (TLRs), which provides early clearance of viral and bacterial pathogens. Here we identified and characterized a full-length genomic sequence of TRIF gene from grass carp Ctenophatyngodon idella (designated as CiTRIF). CiTRIF genomic sequence consists of 3534 base pairs (bp), containing 5' flank sequence (496 bp) and unique intron (815 bp). The full-length cDNA sequence is 2241 bp, including 5' untranslated region (UTR) of 352 bp, 3' UTR of 209 bp, and an open reading frame of 1680 bp encoding a polypeptide of 559 amino acids with an estimated molecular weight of 62.643 kDa and a predicted isoelectric point of 5.71. The deduced amino acid sequence just contains TIR domain, and is most similar to the zebrafish (Danio rerio) TRIF sequence with an identity of 64%. CiTRIF exhibits sequence divergence from its orthologs. Promoter region was predicted and promoter activity was verified. mRNA expression of CiTRIF gene is widespread in 15 tissues investigated, highly in foregut and skin physiological immune barrier. The transcripts of CiTRIF were significantly and rapidly induced in spleen and head kidney tissues at early stage post grass carp reovirus (GCRV) challenge. The modulations are significant but mild in CIK (C idella kidney) cells post GCRV infection or poly(I:C) stimulation. The over-expression vector was constructed and transfected into CIK cell line to get stably expressing recombinant proteins. In CiTRIF transfected cells, mRNA expressions of CiTRIF, CiRIG-I, CiIRF7 and CilFN-I were up-regulated. After GCRV infection, the transcripts of CiTRIF, CiRIG-I, CiIRF7 and CifFN-I fell a little bit after a rapidly and strongly rise. In CiTRIF over-expression cells, virus load and titer were significantly lower than those in controls post GCRV challenge, and virus replication was inhibited obviously. The results indicate that the novel TRIF gene from grass carp plays important roles in modulating antiviral innate immune responses, and serve the further functional studies on TRIF gene in teleosts and immune evolution. (C) 2013 Elsevier Ltd. All rights reserved.
SubtypeArticle
KeywordGrass Carp (Ctenopharyngodon Idella) Trif Genomic Structure Promoter Activity Antiviral Immunity Grass Carp Reovirus
Department[Yang, Chunrong ; Li, Qingmei] Northwest A&F Univ, Coll Vet Med, Yangling 712100, Peoples R China ; [Su, Jianguo ; Chen, Xiaohui ; Peng, Limin] Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China ; [Wang, Yaping] Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
DOI10.1016/j.dci.2013.05.018
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Funding OrganizationNational Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022]
Indexed BySCI
Language英语
WOS Research AreaImmunology ; Zoology
WOS SubjectImmunology ; Zoology
WOS IDWOS:000323870800013
WOS KeywordNF-KAPPA-B ; DOMAIN-CONTAINING ADAPTER ; TOLL-LIKE RECEPTOR-3 ; INTERFERON ANTIVIRAL RESPONSE ; IMMUNE-RESPONSES ; RECOGNITION RECEPTORS ; PATHOGEN RECOGNITION ; INNATE IMMUNITY ; BETA TRIF ; PATHWAY
Funding OrganizationNational Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022] ; National Key Technology Research and Development Program of China [2012BAD25B0201-04]; Program for New Century Excellent Talents in University [NCET-08-0466]; Chinese Universities Scientific Fund [QN2009022]
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Cited Times:10[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/19572
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorSu, JG (reprint author), Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China.
Affiliation1.Northwest A&F Univ, Coll Vet Med, Yangling 712100, Peoples R China
2.Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China
3.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
Recommended Citation
GB/T 7714
Yang, Chunrong,Li, Qingmei,Su, Jianguo,et al. Identification and functional characterizations of a novel TRIF gene from grass carp (Ctenopharyngodon idella)[J]. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,2013,41(2):222-229.
APA Yang, Chunrong.,Li, Qingmei.,Su, Jianguo.,Chen, Xiaohui.,Wang, Yaping.,...&Su, JG .(2013).Identification and functional characterizations of a novel TRIF gene from grass carp (Ctenopharyngodon idella).DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,41(2),222-229.
MLA Yang, Chunrong,et al."Identification and functional characterizations of a novel TRIF gene from grass carp (Ctenopharyngodon idella)".DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 41.2(2013):222-229.
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