IHB OpenIR  > 水生生物多样性与资源保护研究中心  > 期刊论文
Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics
Wang XuZhen1; Gan XiaoNi1; Li JunBing1; Mayden, Richard L.2; He ShunPing1; He, SP (reprint author), Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China.
2012-09-01
Source PublicationSCIENCE CHINA-LIFE SCIENCES
ISSN1674-7305
Volume55Issue:9Pages:761-773
AbstractCyprinidae is the biggest family of freshwater fish, but the phylogenetic relationships among its higher-level taxa are not yet fully resolved. In this study, we used the nuclear recombination activating gene 2 and the mitochondrial 16S ribosomal RNA and cytochrome b genes to reconstruct cyprinid phylogeny. Our aims were to (i) demonstrate the effects of partitioned phylogenetic analyses on phylogeny reconstruction of cyprinid fishes; (ii) provide new insights into the phylogeny of cyprinids. Our study indicated that unpartitioned strategy was optimal for our analyses; partitioned analyses did not provide better-resolved or -supported estimates of cyprinid phylogeny. Bayesian analyses support the following relationships among the major monophyletic groups within Cyprinidae: (Cyprininae, Labeoninae), ((Acheilognathinae, ((Leuciscinae, Tincinae), Gobioninae)), Xenocyprininae). The placement of Danioninae was poorly resolved. Estimates of divergence dates within the family showed that radiation of the major cyprinid groups occurred during the Late Oligocene through the Late Miocene. Our phylogenetic analyses improved our understanding of the evolutionary history of this important fish family.; Cyprinidae is the biggest family of freshwater fish, but the phylogenetic relationships among its higher-level taxa are not yet fully resolved. In this study, we used the nuclear recombination activating gene 2 and the mitochondrial 16S ribosomal RNA and cytochrome b genes to reconstruct cyprinid phylogeny. Our aims were to (i) demonstrate the effects of partitioned phylogenetic analyses on phylogeny reconstruction of cyprinid fishes; (ii) provide new insights into the phylogeny of cyprinids. Our study indicated that unpartitioned strategy was optimal for our analyses; partitioned analyses did not provide better-resolved or -supported estimates of cyprinid phylogeny. Bayesian analyses support the following relationships among the major monophyletic groups within Cyprinidae: (Cyprininae, Labeoninae), ((Acheilognathinae, ((Leuciscinae, Tincinae), Gobioninae)), Xenocyprininae). The placement of Danioninae was poorly resolved. Estimates of divergence dates within the family showed that radiation of the major cyprinid groups occurred during the Late Oligocene through the Late Miocene. Our phylogenetic analyses improved our understanding of the evolutionary history of this important fish family.
SubtypeArticle
KeywordCyprinidae Phylogeny Molecular Dating Partitioned Analyses
Department[Wang XuZhen; Gan XiaoNi; Li JunBing; He ShunPing] Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China; [Mayden, Richard L.] St Louis Univ, Dept Biol, St Louis, MO 63103 USA
DOI10.1007/s11427-012-4366-z
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Funding OrganizationNational Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326]
Indexed BySCI
Language英语
WOS Research AreaLife Sciences & Biomedicine - Other Topics
WOS SubjectBiology
WOS IDWOS:000309236200003
WOS KeywordCYTOCHROME-B SEQUENCES ; EUROPEAN CYPRINIDS ; MIXED MODELS ; MOLECULAR SYSTEMATICS ; FISHES TELEOSTEI ; DIVERGENCE TIMES ; CONTROL REGION ; SELECTION ; BIOGEOGRAPHY ; EVOLUTION
Funding OrganizationNational Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] ; National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326]
Citation statistics
Cited Times:30[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/17160
Collection水生生物多样性与资源保护研究中心_期刊论文
Corresponding AuthorHe, SP (reprint author), Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China.
Affiliation1.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China
2.St Louis Univ, Dept Biol, St Louis, MO 63103 USA
Recommended Citation
GB/T 7714
Wang XuZhen,Gan XiaoNi,Li JunBing,et al. Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics[J]. SCIENCE CHINA-LIFE SCIENCES,2012,55(9):761-773.
APA Wang XuZhen,Gan XiaoNi,Li JunBing,Mayden, Richard L.,He ShunPing,&He, SP .(2012).Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics.SCIENCE CHINA-LIFE SCIENCES,55(9),761-773.
MLA Wang XuZhen,et al."Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics".SCIENCE CHINA-LIFE SCIENCES 55.9(2012):761-773.
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