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A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers
Cheng, L.; Liu, L.; Yu, X.; Wang, D.; Tong, J.; Tong, J, Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
2009
Source PublicationANIMAL GENETICS
ISSN0268-9146
Volume41Issue:2Pages:191-198
AbstractP>Common carp (Cyprinus carpio) is an important fish for aquaculture, but genomics of this species is still in its infancy. In this study, a linkage map of common carp based on Amplified Fragment Length Polymorphism (AFLP) and microsatellite (SSR) markers has been generated using gynogenetic haploids. Of 926 markers genotyped, 151 (149 AFLPs, two SSRs) were distorted and eliminated from the linkage analyses. A total of 699 AFLP and 20 microsatellite (SSR) markers were assigned to the map, which comprised 64 linkage groups and covered 5506.9 cM Kosambi, with an average interval distance of 7.66 cM Kosambi. The normality tests on interval map distances showed a non-normal marker distribution. Visual inspection of the map distance distribution histogram showed a cluster of interval map distances on the left side of the chart, which suggested the occurrence of AFLP marker clusters. On the other hand, the lack of an obvious cluster on the right side showed that there were a few big gaps which need more markers to bridge. The correlation analysis showed a highly significant relatedness between the length of linkage group and the number of markers, indicating that the AFLP markers in this map were randomly distributed among different linkage groups. This study is helpful for research into the common carp genome and for further studies of genetics and marker-assisted breeding in this species.
KeywordAflp Common Carp (Cyprinus Carpio) Haploids Linkage Map Microsatellite (Ssr)
Department[Cheng, L.; Liu, L.; Yu, X.; Wang, D.; Tong, J.] Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China; [Cheng, L.; Liu, L.; Wang, D.] Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China
Subject AreaAgriculture, Dairy & Animal Science ; Genetics & Heredity
Funding OrganizationNSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55]
Indexed BySCI
Language英语
WOS IDWOS:000275204600009
Funding OrganizationNSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55] ; NSF [30771643]; [2004CB117405]; [2010CB126305]; [2006-G55]
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Cited Times:44[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/13645
Collection期刊论文
Corresponding AuthorTong, J, Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
Recommended Citation
GB/T 7714
Cheng, L.,Liu, L.,Yu, X.,et al. A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers[J]. ANIMAL GENETICS,2009,41(2):191-198.
APA Cheng, L.,Liu, L.,Yu, X.,Wang, D.,Tong, J.,&Tong, J, Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China.(2009).A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers.ANIMAL GENETICS,41(2),191-198.
MLA Cheng, L.,et al."A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers".ANIMAL GENETICS 41.2(2009):191-198.
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