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Phylogenetic studies of sinipercid fish (Perciformes: Sinipercidae) based on multiple genes, with first application of an immune-related gene, the virus-induced protein (viperin) gene
Chen, Dali; Guo, Xianguang; Nie, Pin; Chen, DL, Sichuan Univ, Dept Parasitol, Sch Preclin & Forens Med, Chengdu 610041, Sichuan Prov, Peoples R China
2010
Source PublicationMOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
Volume55Issue:3Pages:1167-1176
AbstractThe sinipercid fish represent a group of 12 species of freshwater percoid fish endemic to East Asia. To date published morphological and molecular phylogenetics hypotheses of sinipercid fish are part congruent, and there are some areas of significant disagreement with respect to species relationships. The present study used separate and combined methods to analyze 7307 bp of data from three mitochondrial genes (cyt b, CO1 and 16S rRNA; approximate to 2312 bp) and three nuclear genes (viperin, the first two introns of S7 ribosomal protein gene; approximate to 4995 bp) for the attempts to estimate the relationships among sinipercids and to assess the phylogenetic utility of these markers. Phylogenetic trees were reconstructed using maximum parsimony, maximum likelihood and partitioned Bayesian analyses. Despite the detection of significant heterogeneity of phylogenetic signal between the mitochondrial and nuclear partitions, the combined data analysis represented the best-supported topology of all data. The sinipercid fish form a monophyletic group with two distinct clades, one corresponding to the genus Siniperca and the other to Coreoperca. Coreoperca whiteheadi is the sister taxon to Coreoperca herzi plus Coreoperca kawamebari. In the Siniperca, Siniperca undulata is the sister taxon to the other members of Siniperca, within the subclade containing the other members of the genus, Siniperca chuatsi and Siniperca kneri are sister species, next joined by Siniperca obscura, Siniperca roulei, Siniperca scherzeri and finally by Siniperca fortis. The potential utilities of six different genes for phylogenetic resolution of closely related sinipercid species were also evaluated, with special interest in that of the novel virus-induced protein (viperin) gene. (C) 2010 Elsevier Inc. All rights reserved.
KeywordPhylogeny Sinipercidae Siniperca Coreoperca Viperin Gene S7 Ribosomal Protein Gene
Department[Chen, Dali] Sichuan Univ, Dept Parasitol, Sch Preclin & Forens Med, Chengdu 610041, Sichuan Prov, Peoples R China; [Chen, Dali; Nie, Pin] Chinese Acad Sci, Inst Hydrobiol, Lab Fish Dis, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei Province, Peoples R China; [Guo, Xianguang] Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Sichuan Prov, Peoples R China
Subject AreaBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
Funding OrganizationNational Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005]
Indexed BySCI
Language英语
WOS IDWOS:000277721800033
Funding OrganizationNational Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005] ; National Natural Science Foundation of China ; Government of Guangdong Province [U0631010]; National Natural Science Foundation of China [30800094, 30700062]; Education Foundation for Young Teachers of Sichuan University [07056]; Knowledge Innovation Program of the Chinese Academy of Sciences [CIB-2007-LYQY-Q01, KSCX2-YVV-Z-005]
Citation statistics
Cited Times:21[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/13615
Collection鱼类生物学及渔业生物技术研究中心_期刊论文
Corresponding AuthorChen, DL, Sichuan Univ, Dept Parasitol, Sch Preclin & Forens Med, Chengdu 610041, Sichuan Prov, Peoples R China
Recommended Citation
GB/T 7714
Chen, Dali,Guo, Xianguang,Nie, Pin,et al. Phylogenetic studies of sinipercid fish (Perciformes: Sinipercidae) based on multiple genes, with first application of an immune-related gene, the virus-induced protein (viperin) gene[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2010,55(3):1167-1176.
APA Chen, Dali,Guo, Xianguang,Nie, Pin,&Chen, DL, Sichuan Univ, Dept Parasitol, Sch Preclin & Forens Med, Chengdu 610041, Sichuan Prov, Peoples R China.(2010).Phylogenetic studies of sinipercid fish (Perciformes: Sinipercidae) based on multiple genes, with first application of an immune-related gene, the virus-induced protein (viperin) gene.MOLECULAR PHYLOGENETICS AND EVOLUTION,55(3),1167-1176.
MLA Chen, Dali,et al."Phylogenetic studies of sinipercid fish (Perciformes: Sinipercidae) based on multiple genes, with first application of an immune-related gene, the virus-induced protein (viperin) gene".MOLECULAR PHYLOGENETICS AND EVOLUTION 55.3(2010):1167-1176.
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