IHB OpenIR  > 水生生物多样性与资源保护研究中心  > 期刊论文
Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)
Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni; Mayden, Richard L.; He, Shunping; Tao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China
2010
Source PublicationPLOS ONE
ISSN1932-6203
Volume5Issue:10Pages:-
AbstractDespite their great diversity and biological importance, evolutionary relationships among the endemic clade of East Asian Cyprinidae remain ambiguous. Understanding the phylogenetic history of this group involves many challenges. For instance, ecomorphological convergence may confound morphology-based phylogenetic inferences, and previous molecular phylogenetic studies based on single genes have often yielded contradictory and poorly supported trees. We assembled a comprehensive data matrix of 100 nuclear gene segments (similar to 71132 base pairs) for representative species of the endemic East Asian cyprinid fauna and recovered a robust phylogeny from this genome-wide signal supported by multiple analytical methods, including maximum parsimony, maximum likelihood and Bayesian inference. Relaxed molecular clock analyses indicated species radiations of this clade concentrated at approximately 1.9-7.6 MYA. We provide evidence that the bursts of diversification in this fauna are directly linked to major paleoenvironmental events associated with monsoon evolution occurring from late Miocene to Pliocene. Ancestral state reconstruction reveals convergent morphological characters are hypothesized to be independent products of similar selective pressures in ecosystems. Our study is the first comprehensive phylogenetic study of the enigmatic East-Asian cyprinids. The explicit molecular phylogeny provides a valuable framework for future research in genome evolution, adaptation and speciation of cyprinids.
KeywordOrder Cypriniformes Divergence Time Nuclear Gene Cichlid Fish Mitochondrial Evolutionary Model Teleostei Sequences Actinopterygii
Department[Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni; He, Shunping] Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China; [Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni] Chinese Acad Sci, Grad Univ, Beijing, Peoples R China; [Mayden, Richard L.] St Louis Univ, Dept Biol, Lab Integrated Genom Biodivers & Conservat, St Louis, MO 63103 USA
Subject AreaBiology ; Multidisciplinary Sciences
Funding OrganizationMajor State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326]
Indexed BySCI
Language英语
WOS IDWOS:000283216400015
Funding OrganizationMajor State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326]
Citation statistics
Cited Times:22[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/342005/13459
Collection水生生物多样性与资源保护研究中心_期刊论文
Corresponding AuthorTao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China
Recommended Citation
GB/T 7714
Tao, Wenjing,Zou, Ming,Wang, Xuzhen,et al. Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)[J]. PLOS ONE,2010,5(10):-.
APA Tao, Wenjing.,Zou, Ming.,Wang, Xuzhen.,Gan, Xiaoni.,Mayden, Richard L..,...&Tao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China.(2010).Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes).PLOS ONE,5(10),-.
MLA Tao, Wenjing,et al."Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)".PLOS ONE 5.10(2010):-.
Files in This Item:
File Name/Size DocType Version Access License
Phylogenomic Analysi(1620KB) 开放获取--View Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Tao, Wenjing]'s Articles
[Zou, Ming]'s Articles
[Wang, Xuzhen]'s Articles
Baidu academic
Similar articles in Baidu academic
[Tao, Wenjing]'s Articles
[Zou, Ming]'s Articles
[Wang, Xuzhen]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Tao, Wenjing]'s Articles
[Zou, Ming]'s Articles
[Wang, Xuzhen]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.