| Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes) | |
| Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni; Mayden, Richard L.; He, Shunping; Tao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China | |
| 2010 | |
| Source Publication | PLOS ONE
 |
| ISSN | 1932-6203 |
| Volume | 5Issue:10Pages:- |
| Abstract | Despite their great diversity and biological importance, evolutionary relationships among the endemic clade of East Asian Cyprinidae remain ambiguous. Understanding the phylogenetic history of this group involves many challenges. For instance, ecomorphological convergence may confound morphology-based phylogenetic inferences, and previous molecular phylogenetic studies based on single genes have often yielded contradictory and poorly supported trees. We assembled a comprehensive data matrix of 100 nuclear gene segments (similar to 71132 base pairs) for representative species of the endemic East Asian cyprinid fauna and recovered a robust phylogeny from this genome-wide signal supported by multiple analytical methods, including maximum parsimony, maximum likelihood and Bayesian inference. Relaxed molecular clock analyses indicated species radiations of this clade concentrated at approximately 1.9-7.6 MYA. We provide evidence that the bursts of diversification in this fauna are directly linked to major paleoenvironmental events associated with monsoon evolution occurring from late Miocene to Pliocene. Ancestral state reconstruction reveals convergent morphological characters are hypothesized to be independent products of similar selective pressures in ecosystems. Our study is the first comprehensive phylogenetic study of the enigmatic East-Asian cyprinids. The explicit molecular phylogeny provides a valuable framework for future research in genome evolution, adaptation and speciation of cyprinids. |
| Keyword | Order Cypriniformes Divergence Time Nuclear Gene Cichlid Fish Mitochondrial Evolutionary Model Teleostei Sequences Actinopterygii |
| Department | [Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni; He, Shunping] Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China; [Tao, Wenjing; Zou, Ming; Wang, Xuzhen; Gan, Xiaoni] Chinese Acad Sci, Grad Univ, Beijing, Peoples R China; [Mayden, Richard L.] St Louis Univ, Dept Biol, Lab Integrated Genom Biodivers & Conservat, St Louis, MO 63103 USA |
| Subject Area | Biology ; Multidisciplinary Sciences |
| Funding Organization | Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:000283216400015 |
| Funding Organization | Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] ; Major State Basic Research Development Program of China (973 Program) [2007CB411601, 2004CB117400]; United States National Science Foundation (NSF) [EF-0431326] |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/342005/13459 |
| Collection | 水生生物多样性与资源保护研究中心_期刊论文 |
| Corresponding Author | Tao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China |
| Recommended Citation GB/T 7714 | Tao, Wenjing,Zou, Ming,Wang, Xuzhen,et al. Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)[J]. PLOS ONE,2010,5(10):-. |
| APA | Tao, Wenjing.,Zou, Ming.,Wang, Xuzhen.,Gan, Xiaoni.,Mayden, Richard L..,...&Tao, WJ, Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China.(2010).Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes).PLOS ONE,5(10),-. |
| MLA | Tao, Wenjing,et al."Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)".PLOS ONE 5.10(2010):-. |
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