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The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes
Peng, Zuogang; Wang, Jun; He, Shunping; He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China
2006-07-19
Source PublicationGENE
ISSN0378-1119
Volume376Issue:2Pages:290-297
AbstractThe complete sequence of the 16,539 nucleotide mitochondrial genome from the single species of the catfish family Cranoglanididae, the helmet catfish Cranoglanis bouderius, was determined using the long and accurate polymerase chain reaction (LA PCR) method. The nucleotide sequences of C. bouderius mitochondrial DNA have been compared with those of three other catfish species in the same order. The contents of the C. bouderius mitochondrial genome are 13 protein-coding genes, two ribosomal RNA and 22 transfer RNA genes, and a non-coding control region, the gene order of which is identical to that observed in most other vertebrates. Phylogenetic analyses for 13 otophysan fishes were performed using Bayesian method based on the concatenated mtDNA protein-coding gene sequence and the individual protein-coding gene sequence data set. The competing otophysan topologies were then tested by using the approximately unbiased test, the Kishino-Hasegawa test, and the Shimodaira-Hasegawa test. The results show that the grouping ((((Characifonnes, Gymnotiformes), Siluriformes), Cyprinifionnes), outgroup) is the most likely but there is no significant difference between this one and the other alternative hypotheses. In addition, the phylogenetic placement of the family Cranoglanididae among siluriform families was also discussed. (c) 2006 Elsevier B.V. All rights reserved.; The complete sequence of the 16,539 nucleotide mitochondrial genome from the single species of the catfish family Cranoglanididae, the helmet catfish Cranoglanis bouderius, was determined using the long and accurate polymerase chain reaction (LA PCR) method. The nucleotide sequences of C. bouderius mitochondrial DNA have been compared with those of three other catfish species in the same order. The contents of the C. bouderius mitochondrial genome are 13 protein-coding genes, two ribosomal RNA and 22 transfer RNA genes, and a non-coding control region, the gene order of which is identical to that observed in most other vertebrates. Phylogenetic analyses for 13 otophysan fishes were performed using Bayesian method based on the concatenated mtDNA protein-coding gene sequence and the individual protein-coding gene sequence data set. The competing otophysan topologies were then tested by using the approximately unbiased test, the Kishino-Hasegawa test, and the Shimodaira-Hasegawa test. The results show that the grouping ((((Characifonnes, Gymnotiformes), Siluriformes), Cyprinifionnes), outgroup) is the most likely but there is no significant difference between this one and the other alternative hypotheses. In addition, the phylogenetic placement of the family Cranoglanididae among siluriform families was also discussed. (c) 2006 Elsevier B.V. All rights reserved.
SubtypeArticle
KeywordHelmet Catfish Otophysi Mitochondrial Genome Phylogeny
DepartmentChinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China; Chinese Acad Sci, Beijing Proteom Inst, Beijing Genom Inst, Beijing Inst Genom, Beijing 101300, Peoples R China
Subject AreaGenetics & Heredity
DOI10.1016/j.gene.2006.04.014
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000239357700015
WOS KeywordCOMPLETE NUCLEOTIDE-SEQUENCE ; HIGHER-LEVEL RELATIONSHIPS ; DNA-SEQUENCE ; OSTARIOPHYSAN FISHES ; TREE SELECTION ; VERTEBRATES ; ORGANIZATION ; PERSPECTIVE ; TELEOSTEI ; ESTABLISHMENT
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Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/152342/8898
Collection期刊论文
Corresponding AuthorHe, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China
Affiliation1.Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China
2.Chinese Acad Sci, Beijing Proteom Inst, Beijing Genom Inst, Beijing Inst Genom, Beijing 101300, Peoples R China
Recommended Citation
GB/T 7714
Peng, Zuogang,Wang, Jun,He, Shunping,et al. The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes[J]. GENE,2006,376(2):290-297.
APA Peng, Zuogang,Wang, Jun,He, Shunping,&He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China.(2006).The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes.GENE,376(2),290-297.
MLA Peng, Zuogang,et al."The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes".GENE 376.2(2006):290-297.
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