| The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes | |
| Peng, Zuogang; Wang, Jun; He, Shunping; He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China | |
| 2006-07-19 | |
| Source Publication | GENE
 |
| ISSN | 0378-1119 |
| Volume | 376Issue:2Pages:290-297 |
| Abstract | The complete sequence of the 16,539 nucleotide mitochondrial genome from the single species of the catfish family Cranoglanididae, the helmet catfish Cranoglanis bouderius, was determined using the long and accurate polymerase chain reaction (LA PCR) method. The nucleotide sequences of C. bouderius mitochondrial DNA have been compared with those of three other catfish species in the same order. The contents of the C. bouderius mitochondrial genome are 13 protein-coding genes, two ribosomal RNA and 22 transfer RNA genes, and a non-coding control region, the gene order of which is identical to that observed in most other vertebrates. Phylogenetic analyses for 13 otophysan fishes were performed using Bayesian method based on the concatenated mtDNA protein-coding gene sequence and the individual protein-coding gene sequence data set. The competing otophysan topologies were then tested by using the approximately unbiased test, the Kishino-Hasegawa test, and the Shimodaira-Hasegawa test. The results show that the grouping ((((Characifonnes, Gymnotiformes), Siluriformes), Cyprinifionnes), outgroup) is the most likely but there is no significant difference between this one and the other alternative hypotheses. In addition, the phylogenetic placement of the family Cranoglanididae among siluriform families was also discussed. (c) 2006 Elsevier B.V. All rights reserved.; The complete sequence of the 16,539 nucleotide mitochondrial genome from the single species of the catfish family Cranoglanididae, the helmet catfish Cranoglanis bouderius, was determined using the long and accurate polymerase chain reaction (LA PCR) method. The nucleotide sequences of C. bouderius mitochondrial DNA have been compared with those of three other catfish species in the same order. The contents of the C. bouderius mitochondrial genome are 13 protein-coding genes, two ribosomal RNA and 22 transfer RNA genes, and a non-coding control region, the gene order of which is identical to that observed in most other vertebrates. Phylogenetic analyses for 13 otophysan fishes were performed using Bayesian method based on the concatenated mtDNA protein-coding gene sequence and the individual protein-coding gene sequence data set. The competing otophysan topologies were then tested by using the approximately unbiased test, the Kishino-Hasegawa test, and the Shimodaira-Hasegawa test. The results show that the grouping ((((Characifonnes, Gymnotiformes), Siluriformes), Cyprinifionnes), outgroup) is the most likely but there is no significant difference between this one and the other alternative hypotheses. In addition, the phylogenetic placement of the family Cranoglanididae among siluriform families was also discussed. (c) 2006 Elsevier B.V. All rights reserved. |
| Subtype | Article |
| Keyword | Helmet Catfish Otophysi Mitochondrial Genome Phylogeny |
| Department | Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China; Chinese Acad Sci, Beijing Proteom Inst, Beijing Genom Inst, Beijing Inst Genom, Beijing 101300, Peoples R China |
| Subject Area | Genetics & Heredity |
| DOI | 10.1016/j.gene.2006.04.014 |
| WOS Headings | Science & Technology ; Life Sciences & Biomedicine |
| Indexed By | SCI |
| Language | 英语 |
| WOS Research Area | Genetics & Heredity |
| WOS Subject | Genetics & Heredity |
| WOS ID | WOS:000239357700015 |
| WOS Keyword | COMPLETE NUCLEOTIDE-SEQUENCE ; HIGHER-LEVEL RELATIONSHIPS ; DNA-SEQUENCE ; OSTARIOPHYSAN FISHES ; TREE SELECTION ; VERTEBRATES ; ORGANIZATION ; PERSPECTIVE ; TELEOSTEI ; ESTABLISHMENT |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ihb.ac.cn/handle/152342/8898 |
| Collection | 期刊论文 |
| Corresponding Author | He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China |
| Affiliation | 1.Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, Wuhan 430072, Peoples R China 2.Chinese Acad Sci, Beijing Proteom Inst, Beijing Genom Inst, Beijing Inst Genom, Beijing 101300, Peoples R China |
| Recommended Citation GB/T 7714 | Peng, Zuogang,Wang, Jun,He, Shunping,et al. The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes[J]. GENE,2006,376(2):290-297. |
| APA | Peng, Zuogang,Wang, Jun,He, Shunping,&He, SP, Chinese Acad Sci, Inst Hydrobiol, Lab Fish Phylogenet & Biogeog, 7th Donghu S Rd, Wuhan 430072, Peoples R China.(2006).The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes.GENE,376(2),290-297. |
| MLA | Peng, Zuogang,et al."The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes : Cranoglanididae) and the phylogeny of otophysan fishes".GENE 376.2(2006):290-297. |
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| The complete mitocho（240KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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