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学科主题: Virology
题名: Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China
作者: Teng, Y.; Liu, H.; Lv, J. Q.; Fan, W. H.; Zhang, Q. Y.; Qin, Q. W.
通讯作者: Qin, QW, Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, 135 W Xingang Rd, Guangzhou 510275, Peoples R China
关键词: STRAND RNA VIRUSES ; NUCLEOTIDE-SEQUENCE ; GLYCOPROTEIN GENE ; FISH ; RHABDOVIRUS ; PROTEINS ; DOMAINS ; JUNCTIONS ; ALIGNMENT
刊名: ARCHIVES OF VIROLOGY
发表日期: 2007-08-01
DOI: 10.1007/s00705-007-0971-8
卷: 152, 期:8, 页:1457-1465
收录类别: SCI
文章类型: Article
部门归属: Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Peoples R China; Shenzhen Exit & Entry Inspec & Quarantine Bur, Key Lab Aquat Anim Dis, Shenzhen, Peoples R China; Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
WOS标题词: Science & Technology ; Life Sciences & Biomedicine
类目[WOS]: Virology
研究领域[WOS]: Virology
摘要: The complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcription-polymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633-4676 and bp 4684-4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3'-N-P-M-G-L-5'. This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.
英文摘要: The complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcription-polymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633-4676 and bp 4684-4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3'-N-P-M-G-L-5'. This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.
关键词[WOS]: STRAND RNA VIRUSES ; NUCLEOTIDE-SEQUENCE ; GLYCOPROTEIN GENE ; FISH ; RHABDOVIRUS ; PROTEINS ; DOMAINS ; JUNCTIONS ; ALIGNMENT
语种: 英语
WOS记录号: WOS:000248374600004
ISSN号: 0304-8608
Citation statistics:
内容类型: 期刊论文
URI标识: http://ir.ihb.ac.cn/handle/152342/8464
Appears in Collections:中科院水生所知识产出(2009年前)_期刊论文

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作者单位: 1.Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Peoples R China
2.Shenzhen Exit & Entry Inspec & Quarantine Bur, Key Lab Aquat Anim Dis, Shenzhen, Peoples R China
3.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China

Recommended Citation:
Teng, Y.; Liu, H.; Lv, J. Q.; Fan, W. H.; Zhang, Q. Y.; Qin, Q. W..Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China,ARCHIVES OF VIROLOGY,2007,152(8):1457-1465
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