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Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China
Teng, Y.; Liu, H.; Lv, J. Q.; Fan, W. H.; Zhang, Q. Y.; Qin, Q. W.; Qin, QW, Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, 135 W Xingang Rd, Guangzhou 510275, Peoples R China
2007-08-01
Source PublicationARCHIVES OF VIROLOGY
ISSN0304-8608
Volume152Issue:8Pages:1457-1465
AbstractThe complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcription-polymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633-4676 and bp 4684-4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3'-N-P-M-G-L-5'. This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.; The complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcription-polymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633-4676 and bp 4684-4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3'-N-P-M-G-L-5'. This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.
SubtypeArticle
KeywordStrand Rna Viruses Nucleotide-sequence Glycoprotein Gene Fish Rhabdovirus Proteins Domains Junctions Alignment
DepartmentSun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Peoples R China; Shenzhen Exit & Entry Inspec & Quarantine Bur, Key Lab Aquat Anim Dis, Shenzhen, Peoples R China; Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
Subject AreaVirology
DOI10.1007/s00705-007-0971-8
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaVirology
WOS SubjectVirology
WOS IDWOS:000248374600004
WOS KeywordSTRAND RNA VIRUSES ; NUCLEOTIDE-SEQUENCE ; GLYCOPROTEIN GENE ; FISH ; RHABDOVIRUS ; PROTEINS ; DOMAINS ; JUNCTIONS ; ALIGNMENT
Citation statistics
Cited Times:67[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/152342/8464
Collection期刊论文
Corresponding AuthorQin, QW, Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, 135 W Xingang Rd, Guangzhou 510275, Peoples R China
Affiliation1.Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Peoples R China
2.Shenzhen Exit & Entry Inspec & Quarantine Bur, Key Lab Aquat Anim Dis, Shenzhen, Peoples R China
3.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
Recommended Citation
GB/T 7714
Teng, Y.,Liu, H.,Lv, J. Q.,et al. Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China[J]. ARCHIVES OF VIROLOGY,2007,152(8):1457-1465.
APA Teng, Y..,Liu, H..,Lv, J. Q..,Fan, W. H..,Zhang, Q. Y..,...&Qin, QW, Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, 135 W Xingang Rd, Guangzhou 510275, Peoples R China.(2007).Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China.ARCHIVES OF VIROLOGY,152(8),1457-1465.
MLA Teng, Y.,et al."Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China".ARCHIVES OF VIROLOGY 152.8(2007):1457-1465.
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