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学科主题: Evolutionary Biology; Developmental Biology; Zoology
题名: Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species
作者: Mayden, Richard L.; Tang, Kevin L.; Conway, Kevin W.; Freyhof, Joerg; Chamberlain, Sarah; Haskins, Miranda; Schneider, Leah; Sudkamp, Mitchell; Wood, Robert M.; Agnew, Mary; Bufalino, Angelo; Sulaiman, Zohrah; Miya, Masaki; Saitoh, Kenji; He, Shunping
通讯作者: Mayden, RL, St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA
关键词: MOLECULAR PHYLOGENY ; TELEOSTEI ; OSTARIOPHYSI ; CYPRINIDAE ; ZEBRAFISH ; INFERENCE ; INTERRELATIONSHIPS ; ACTINOPTERYGII ; PRIMERS ; MRBAYES
刊名: JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
发表日期: 2007-09-15
DOI: 10.1002/jez.b.21175
卷: 308B, 期:5, 页:642-654
收录类别: SCI
文章类型: Article
部门归属: St Louis Univ, Dept Biol, St Louis, MO 63103 USA; Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany; Univ Brunei Darussalam, Fac Sci, Dept Biol, Tungku BE, Brunei; Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba, Japan; Tohoku Natl Fisheries Res Inst, Shiogama, Miyagi, Japan; Chinese Acad Sci, Inst Hydrobiol, Wuhan, Peoples R China
WOS标题词: Science & Technology ; Life Sciences & Biomedicine
类目[WOS]: Evolutionary Biology ; Developmental Biology ; Zoology
研究领域[WOS]: Evolutionary Biology ; Developmental Biology ; Zoology
摘要: The evolutionary relationships of species of Danio and the monophyly and phylogenetic placement of the genus within the family Cyprinidae and subfamily Rasborinae provide fundamentally important phyloinformatics necessary for direct evaluations of an array of pertinent questions in modern comparative biology. Although the genus Danio is not one of the most diverse within the family, Danio rerio is one of the most important model species in biology. Many investigations have used this species or presumed close relatives to address specific questions that have lasting impact on the hypothesis and theory of development in vertebrates. Largely lacking from this approach has been a holistic picture of the exact phylogenetic or evolutionary relationships of this species and its close relatives. One thing that has been learned over the previous century is that many organismal attributes (e.g., developmental pathways, ecologies, behaviors, speciation) are historically constrained and their origins and functions are best explained via a phylogenetic approach. Herein, we provide a molecular evaluation of the phylogenetic placement of the model species Danio rerio within the genus Danio and among hypothesized closely related species and genera. Our analysis is derived from data using two nuclear genes (RAG1, rhodopsin) and five mitochondrial genes (ND4, ND4L, ND5, COI, cyt b) evaluated using parsimony, maximum likelihood, and Bayesian analyses. The family Cyprinidae is resolved as monophyletic but the subfamily Rasborinae (priority over Danioinae) is an unnatural assemblage. Danio is identified as a monophyletic group sister to a clade inclusive of the genera Chela, Microrasbora, Devario, and Inlecypris, not Devario nor Esomus as hypothesized in previous studies. Danio rerio is sister to D. kyathit among the species of Danio evaluated in this analysis. Microrasbora and Rasbora are non-monophyletic assemblages; however, Boraras is monophyletic.
英文摘要: The evolutionary relationships of species of Danio and the monophyly and phylogenetic placement of the genus within the family Cyprinidae and subfamily Rasborinae provide fundamentally important phyloinformatics necessary for direct evaluations of an array of pertinent questions in modern comparative biology. Although the genus Danio is not one of the most diverse within the family, Danio rerio is one of the most important model species in biology. Many investigations have used this species or presumed close relatives to address specific questions that have lasting impact on the hypothesis and theory of development in vertebrates. Largely lacking from this approach has been a holistic picture of the exact phylogenetic or evolutionary relationships of this species and its close relatives. One thing that has been learned over the previous century is that many organismal attributes (e.g., developmental pathways, ecologies, behaviors, speciation) are historically constrained and their origins and functions are best explained via a phylogenetic approach. Herein, we provide a molecular evaluation of the phylogenetic placement of the model species Danio rerio within the genus Danio and among hypothesized closely related species and genera. Our analysis is derived from data using two nuclear genes (RAG1, rhodopsin) and five mitochondrial genes (ND4, ND4L, ND5, COI, cyt b) evaluated using parsimony, maximum likelihood, and Bayesian analyses. The family Cyprinidae is resolved as monophyletic but the subfamily Rasborinae (priority over Danioinae) is an unnatural assemblage. Danio is identified as a monophyletic group sister to a clade inclusive of the genera Chela, Microrasbora, Devario, and Inlecypris, not Devario nor Esomus as hypothesized in previous studies. Danio rerio is sister to D. kyathit among the species of Danio evaluated in this analysis. Microrasbora and Rasbora are non-monophyletic assemblages; however, Boraras is monophyletic.
关键词[WOS]: MOLECULAR PHYLOGENY ; TELEOSTEI ; OSTARIOPHYSI ; CYPRINIDAE ; ZEBRAFISH ; INFERENCE ; INTERRELATIONSHIPS ; ACTINOPTERYGII ; PRIMERS ; MRBAYES
语种: 英语
WOS记录号: WOS:000250017800009
ISSN号: 1552-5007
Citation statistics:
内容类型: 期刊论文
URI标识: http://ir.ihb.ac.cn/handle/152342/8400
Appears in Collections:中科院水生所知识产出(2009年前)_期刊论文

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作者单位: 1.St Louis Univ, Dept Biol, St Louis, MO 63103 USA
2.Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany
3.Univ Brunei Darussalam, Fac Sci, Dept Biol, Tungku BE, Brunei
4.Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba, Japan
5.Tohoku Natl Fisheries Res Inst, Shiogama, Miyagi, Japan
6.Chinese Acad Sci, Inst Hydrobiol, Wuhan, Peoples R China

Recommended Citation:
Mayden, Richard L.; Tang, Kevin L.; Conway, Kevin W.; Freyhof, Joerg; Chamberlain, Sarah; Haskins, Miranda; Schneider, Leah; Sudkamp, Mitchell; Wood, Robert M.; Agnew, Mary; Bufalino, Angelo; Sulaiman, Zohrah; Miya, Masaki; Saitoh, Kenji; He, Shunping.Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species,JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION,2007,308B(5):642-654
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