IHB OpenIR  > 期刊论文
Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species
Mayden, Richard L.; Tang, Kevin L.; Conway, Kevin W.; Freyhof, Joerg; Chamberlain, Sarah; Haskins, Miranda; Schneider, Leah; Sudkamp, Mitchell; Wood, Robert M.; Agnew, Mary; Bufalino, Angelo; Sulaiman, Zohrah; Miya, Masaki; Saitoh, Kenji; He, Shunping; Mayden, RL, St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA
2007-09-15
Source PublicationJOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
ISSN1552-5007
Volume308BIssue:5Pages:642-654
AbstractThe evolutionary relationships of species of Danio and the monophyly and phylogenetic placement of the genus within the family Cyprinidae and subfamily Rasborinae provide fundamentally important phyloinformatics necessary for direct evaluations of an array of pertinent questions in modern comparative biology. Although the genus Danio is not one of the most diverse within the family, Danio rerio is one of the most important model species in biology. Many investigations have used this species or presumed close relatives to address specific questions that have lasting impact on the hypothesis and theory of development in vertebrates. Largely lacking from this approach has been a holistic picture of the exact phylogenetic or evolutionary relationships of this species and its close relatives. One thing that has been learned over the previous century is that many organismal attributes (e.g., developmental pathways, ecologies, behaviors, speciation) are historically constrained and their origins and functions are best explained via a phylogenetic approach. Herein, we provide a molecular evaluation of the phylogenetic placement of the model species Danio rerio within the genus Danio and among hypothesized closely related species and genera. Our analysis is derived from data using two nuclear genes (RAG1, rhodopsin) and five mitochondrial genes (ND4, ND4L, ND5, COI, cyt b) evaluated using parsimony, maximum likelihood, and Bayesian analyses. The family Cyprinidae is resolved as monophyletic but the subfamily Rasborinae (priority over Danioinae) is an unnatural assemblage. Danio is identified as a monophyletic group sister to a clade inclusive of the genera Chela, Microrasbora, Devario, and Inlecypris, not Devario nor Esomus as hypothesized in previous studies. Danio rerio is sister to D. kyathit among the species of Danio evaluated in this analysis. Microrasbora and Rasbora are non-monophyletic assemblages; however, Boraras is monophyletic.; The evolutionary relationships of species of Danio and the monophyly and phylogenetic placement of the genus within the family Cyprinidae and subfamily Rasborinae provide fundamentally important phyloinformatics necessary for direct evaluations of an array of pertinent questions in modern comparative biology. Although the genus Danio is not one of the most diverse within the family, Danio rerio is one of the most important model species in biology. Many investigations have used this species or presumed close relatives to address specific questions that have lasting impact on the hypothesis and theory of development in vertebrates. Largely lacking from this approach has been a holistic picture of the exact phylogenetic or evolutionary relationships of this species and its close relatives. One thing that has been learned over the previous century is that many organismal attributes (e.g., developmental pathways, ecologies, behaviors, speciation) are historically constrained and their origins and functions are best explained via a phylogenetic approach. Herein, we provide a molecular evaluation of the phylogenetic placement of the model species Danio rerio within the genus Danio and among hypothesized closely related species and genera. Our analysis is derived from data using two nuclear genes (RAG1, rhodopsin) and five mitochondrial genes (ND4, ND4L, ND5, COI, cyt b) evaluated using parsimony, maximum likelihood, and Bayesian analyses. The family Cyprinidae is resolved as monophyletic but the subfamily Rasborinae (priority over Danioinae) is an unnatural assemblage. Danio is identified as a monophyletic group sister to a clade inclusive of the genera Chela, Microrasbora, Devario, and Inlecypris, not Devario nor Esomus as hypothesized in previous studies. Danio rerio is sister to D. kyathit among the species of Danio evaluated in this analysis. Microrasbora and Rasbora are non-monophyletic assemblages; however, Boraras is monophyletic.
SubtypeArticle
KeywordMolecular Phylogeny Teleostei Ostariophysi Cyprinidae Zebrafish Inference Interrelationships Actinopterygii Primers Mrbayes
DepartmentSt Louis Univ, Dept Biol, St Louis, MO 63103 USA; Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany; Univ Brunei Darussalam, Fac Sci, Dept Biol, Tungku BE, Brunei; Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba, Japan; Tohoku Natl Fisheries Res Inst, Shiogama, Miyagi, Japan; Chinese Acad Sci, Inst Hydrobiol, Wuhan, Peoples R China
Subject AreaEvolutionary Biology ; Developmental Biology ; Zoology
DOI10.1002/jez.b.21175
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
Indexed BySCI
Language英语
WOS Research AreaEvolutionary Biology ; Developmental Biology ; Zoology
WOS SubjectEvolutionary Biology ; Developmental Biology ; Zoology
WOS IDWOS:000250017800009
WOS KeywordMOLECULAR PHYLOGENY ; TELEOSTEI ; OSTARIOPHYSI ; CYPRINIDAE ; ZEBRAFISH ; INFERENCE ; INTERRELATIONSHIPS ; ACTINOPTERYGII ; PRIMERS ; MRBAYES
Citation statistics
Cited Times:86[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ihb.ac.cn/handle/152342/8400
Collection期刊论文
Corresponding AuthorMayden, RL, St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA
Affiliation1.St Louis Univ, Dept Biol, St Louis, MO 63103 USA
2.Leibniz Inst Freshwater Ecol & Inland Fisheries, Berlin, Germany
3.Univ Brunei Darussalam, Fac Sci, Dept Biol, Tungku BE, Brunei
4.Nat Hist Museum & Inst, Dept Zool, Chuo Ku, Chiba, Japan
5.Tohoku Natl Fisheries Res Inst, Shiogama, Miyagi, Japan
6.Chinese Acad Sci, Inst Hydrobiol, Wuhan, Peoples R China
Recommended Citation
GB/T 7714
Mayden, Richard L.,Tang, Kevin L.,Conway, Kevin W.,et al. Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species[J]. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION,2007,308B(5):642-654.
APA Mayden, Richard L..,Tang, Kevin L..,Conway, Kevin W..,Freyhof, Joerg.,Chamberlain, Sarah.,...&Mayden, RL, St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA.(2007).Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species.JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION,308B(5),642-654.
MLA Mayden, Richard L.,et al."Phylogenetic relationships of Danio within the order cypriniformes: A framework for comparative and evolutionary studies of a model species".JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 308B.5(2007):642-654.
Files in This Item:
File Name/Size DocType Version Access License
Phylogenetic relatio(515KB) 开放获取--View Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Mayden, Richard L.]'s Articles
[Tang, Kevin L.]'s Articles
[Conway, Kevin W.]'s Articles
Baidu academic
Similar articles in Baidu academic
[Mayden, Richard L.]'s Articles
[Tang, Kevin L.]'s Articles
[Conway, Kevin W.]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Mayden, Richard L.]'s Articles
[Tang, Kevin L.]'s Articles
[Conway, Kevin W.]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: Phylogenetic relationships of Danio within the order cypriniformes-A framework for comparative and evolutionary studies of a model species.pdf
Format: Adobe PDF
This file does not support browsing at this time
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.